SILENT_MODE BLOCK_FILE jp_JI_AsIT.concise.blc MAX_NSEQ 414 MAX_INPUT_LEN 416 OUTPUT_FILE jp_JI_AsIT.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 71 403 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 404 71 413 H SPACE SUB_CHARS 1 404 71 413 E SPACE SUB_CHARS 1 404 71 413 - SPACE STRAND 34 407 39 COLOUR_TEXT_REGION 34 407 39 407 51 STRAND 59 407 61 COLOUR_TEXT_REGION 59 407 61 407 51 STRAND 66 407 70 COLOUR_TEXT_REGION 66 407 70 407 51 HELIX 9 407 28 COLOUR_TEXT_REGION 9 407 28 407 50 HELIX 45 407 54 COLOUR_TEXT_REGION 45 407 54 407 50 STRAND 28 412 29 COLOUR_TEXT_REGION 28 412 29 412 51 STRAND 34 412 38 COLOUR_TEXT_REGION 34 412 38 412 51 STRAND 58 412 61 COLOUR_TEXT_REGION 58 412 61 412 51 STRAND 66 412 70 COLOUR_TEXT_REGION 66 412 70 412 51 HELIX 9 412 26 COLOUR_TEXT_REGION 9 412 26 412 50 HELIX 45 412 54 COLOUR_TEXT_REGION 45 412 54 412 50 STRAND 34 413 39 COLOUR_TEXT_REGION 34 413 39 413 51 STRAND 59 413 61 COLOUR_TEXT_REGION 59 413 61 413 51 STRAND 66 413 70 COLOUR_TEXT_REGION 66 413 70 413 51 HELIX 8 413 28 COLOUR_TEXT_REGION 8 413 28 413 50 HELIX 45 413 54 COLOUR_TEXT_REGION 45 413 54 413 50