SILENT_MODE
BLOCK_FILE jp_N6oUgat.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_N6oUgat.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 56 32   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 33 56 42 H SPACE
SUB_CHARS 1 33 56 42 E SPACE
SUB_CHARS 1 33 56 42 - SPACE
STRAND 3 36 8
COLOUR_TEXT_REGION 3 36 8 36 51
STRAND 14 36 19
COLOUR_TEXT_REGION 14 36 19 36 51
STRAND 42 36 44
COLOUR_TEXT_REGION 42 36 44 36 51
STRAND 51 36 54
COLOUR_TEXT_REGION 51 36 54 36 51
HELIX 23 36 35
COLOUR_TEXT_REGION 23 36 35 36 50
STRAND 3 41 8
COLOUR_TEXT_REGION 3 41 8 41 51
STRAND 14 41 20
COLOUR_TEXT_REGION 14 41 20 41 51
STRAND 42 41 44
COLOUR_TEXT_REGION 42 41 44 41 51
STRAND 51 41 54
COLOUR_TEXT_REGION 51 41 54 41 51
HELIX 23 41 35
COLOUR_TEXT_REGION 23 41 35 41 50
STRAND 4 42 7
COLOUR_TEXT_REGION 4 42 7 42 51
STRAND 41 42 45
COLOUR_TEXT_REGION 41 42 45 42 51
STRAND 51 42 54
COLOUR_TEXT_REGION 51 42 54 42 51
HELIX 14 42 19
COLOUR_TEXT_REGION 14 42 19 42 50
HELIX 23 42 34
COLOUR_TEXT_REGION 23 42 34 42 50