QUERY                  : MQYKLILNGKTLKGVLTIEAVDAATAEKVFKQYANDLGVDGEWTYDDATKTFTVTE : QUERY 
UniRef90_Q93EM8        : --YKLVINGKTLKGETTTKAVDVETAEKAFKQYANENGVDGVWTYDDATKTFTVTE : UniRef90_Q93EM8
UniRef90_Q93EM8        : --YKLIVKGNTFSGETTTKAVDAETAEKAFKQYATANNVDGEWSYDDATKTFTVTE : UniRef90_Q93EM8
UniRef90_Q93EM8        : --YKLIVKGNTFSGETTTKAIDAATAEKEFKQYATANNVDGEWSYDDATKTFTVTE : UniRef90_Q93EM8
UniRef90_Q93EM8        : --YKLVVKGNTFSGETTTKAIDTATAEKEFKQYATANNVDGEWSYDDATKTFTVTE : UniRef90_Q93EM8
UniRef90_Q93EM8        : --YKLIVKGNTFSGETTTKAIDAATAEKEFKQYATANNVDGEWSYDYATKTFTVTE : UniRef90_Q93EM8
UniRef90_B4U242        : --YRLVIKGVTFSGETATKAVDAATAEQTFRQYANDNGITGEWAYDTATKTFTVTE : UniRef90_B4U242
UniRef90_B4U242        : --YKLVIKGATFSGETATKAVDAAVAEQTFRDYANKNGVDGVWAYDAATKTFTVTE : UniRef90_B4U242
UniRef90_Q54181        : --YKLVINGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE : UniRef90_Q54181
UniRef90_Q54181        : --YKLVINGKTLKGETTTKAVDAETAEKAFKQYANDNGVDGVWTYDDATKTFTVTE : UniRef90_Q54181
UniRef90_Q54181        : -----------MKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE : UniRef90_Q54181
UniRef90_K9EBV2        : -------NTRGKNGATTVKAGNPEEAEKYFRNWASENGLDLDWAYDESSRTFTARE : UniRef90_K9EBV2
UniRef90_K9EBV2        : ----------TTKGSTSFKSPSIGEAKKYFDQYAKESGLDLVWTFDPDSRTFTA-- : UniRef90_K9EBV2
UniRef90_K9EBI3        : --YYFAQRTKGKNGATTVKAKSAEEAEKYFRNWANENDLDLEWSYDEDSKTFTARE : UniRef90_K9EBI3
UniRef90_K9EBI3        : --YYFAQQTKGKNGATTVKAKSAEEAEKYFRNWANENDLDLEWSYDEDSKTFTARE : UniRef90_K9EBI3
UniRef90_K9EBI3        : --YYFAQRTKGKNGATTVKAKSAEEAETYFKNFANENDLDLKWSYDEETKTFTARE : UniRef90_K9EBI3
UniRef90_K9EBI3        : --YYFAQRTKGKNGVTTVKAPNSDRAEAYFRNWVNENDLDLEWSYDPETKTFIARE : UniRef90_K9EBI3
UniRef90_UPI00017EE952 : --YKLILNLKQAKEEAIKELVDAATAEKYFKLYANAKTVEGVWTYKDETKTFTVTE : UniRef90_UPI00017EE952
UniRef90_A0A034G6D1    : MKYALVIKGKTLTGTTTKEAISPEAAEKYFRDYATSNGVDAEWSYDKATRTFTVAE : UniRef90_A0A034G6D1
UniRef90_A0A034G6D1    : MTYTLIIKGRTLTGTTTTKALSPEAAEKYFRNYATSNGIDTEWSYDKATRTFTVIE : UniRef90_A0A034G6D1
UniRef90_A0A034G6D1    : --YHLVVNGKTLTATISYQATGTVQAGNYFENYVKSQGINADWSYDDVTRTFTVTE : UniRef90_A0A034G6D1
UniRef90_K9E8M0        : ----LTPNTNGKNGATTVKASSAEQAEKYFKNFVNENGLDLEWSYDEDTKTFTAIE : UniRef90_K9E8M0
UniRef90_K9E8M0        : -------NTKGKNGATTVKATSVEEALEYFQNFASENGLDLDWFYNEESKSFTARE : UniRef90_K9E8M0
UniRef90_K9EXL1        : -------NTKGKNGATTVKASSPEEALEYFQNWAKENDLELDWSYDEDTKTFTGRE : UniRef90_K9EXL1
UniRef90_K9EAV4        : ----IIQNTKGKNGATTVKASSPEEAKAYFEEFAKENDLELDWTYDEDTKTFTARE : UniRef90_K9EAV4
UniRef90_K9EAV4        : --------TQGQNGATTVKASSPREALEYFQAFLNENGLDANWSYDSESRAFTASE : UniRef90_K9EAV4
UniRef90_K9E8I0        : -------NTKGQNGATTVKASSLEEAKEYFQNWAEEHDLDLEWSYDEETKTFTAHE : UniRef90_K9E8I0
UniRef90_Q56193        : --YKLILNGKTLKGETTTEAVDAATARSFFPILENSSSVPGD-------------- : UniRef90_Q56193
UniRef90_E4KPW8        : --YKLVVNSEDAQITSEYTASSVELAGQYFRDYVNNNGLDLEWSYDPATYTFTATD : UniRef90_E4KPW8

                       : 1---------11--------21--------31--------41--------51---- :
OrigSeq                : MQYKLILNGKTLKGVLTIEAVDAATAEKVFKQYANDLGVDGEWTYDDATKTFTVTE : OrigSeq

Jnet                   : --EEEEEE-----EEEEEE---HHHHHHHHHHHHH------EEE------EEEE-- : Jnet
jhmm                   : --EEEEEE-----EEEEEEE--HHHHHHHHHHHHH------EEE------EEEE-- : jhmm
jpssm                  : ---EEEE------HHHHHH---HHHHHHHHHHHH------EEEEE-----EEEE-- : jpssm

Lupas 14               : -------------------------------------------------------- : Lupas 14
Lupas 21               : -------------------------------------------------------- : Lupas 21
Lupas 28               : -------------------------------------------------------- : Lupas 28

Jnet_25                : --B-BBB-B--B---B---B-----B--BB--BB----B-B-B-B---B--B-B-- : Jnet_25
Jnet_5                 : -------------------B-----B---B-------------------------- : Jnet_5
Jnet_0                 : -------------------------B---B-------------------------- : Jnet_0
Jnet Rel               : 99256541546751111111565899999998720788851677157763688469 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.