Filename Description -------- ----------- jp_bUt6mil.align PSIBLAST alignment with gaps and redundancy removed in FASTA format jp_bUt6mil.als Alscript command file. Used to generate PS/PDF outputjp_bUt6mil.blast.gz PSIBLAST output (compressed) jp_bUt6mil.coils.csv The output from coils in CSV format jp_bUt6mil.coilseq.lupas_14 The output from coils using a window length of 14 jp_bUt6mil.coilseq.lupas_21 The output from coils using a window length of 21 jp_bUt6mil.coilseq.lupas_28 The output from coils using a window length of 28 jp_bUt6mil.concise The prediction in pseudo-CSV format, including the coiled-coil prediction, solvent accessiblity and the sequence alignment jp_bUt6mil.concise.blc A BLC file of the prediction and alignment jp_bUt6mil.concise.pdf A PDF file of the prediction and alignment jp_bUt6mil.fasta Input query sequence in FASTA format jp_bUt6mil.full_MSA.fasta The full multuple sequence alignment before JPred filters. Gaps/insertions shown. FASTA format. jp_bUt6mil.hmm The HHMer2 profile of the alignment jp_bUt6mil.html A HTML file of the prediction and alignment jp_bUt6mil.input Your raw input jp_bUt6mil.jalview A Jalview annotation file to be read in with the .align file to view the predictions in Jalview jp_bUt6mil.jnet The output from Jnet jp_bUt6mil.profile PSIBLAST profile jp_bUt6mil.pssm PSIBLAST PSSM in a format for Jnet jp_bUt6mil.seq Your sequence jp_bUt6mil.simple.html The brief HTML output of the query sequence and prediction only jp_bUt6mil.svg.html A Jalview generated SVG file with summary of the results.