SILENT_MODE
BLOCK_FILE jp_bUt6mil.concise.blc
MAX_NSEQ 877
MAX_INPUT_LEN 879
OUTPUT_FILE jp_bUt6mil.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 109 866   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 867 109 876 H SPACE
SUB_CHARS 1 867 109 876 E SPACE
SUB_CHARS 1 867 109 876 - SPACE
STRAND 4 870 8
COLOUR_TEXT_REGION 4 870 8 870 51
STRAND 12 870 15
COLOUR_TEXT_REGION 12 870 15 870 51
STRAND 20 870 28
COLOUR_TEXT_REGION 20 870 28 870 51
STRAND 34 870 42
COLOUR_TEXT_REGION 34 870 42 870 51
STRAND 57 870 61
COLOUR_TEXT_REGION 57 870 61 870 51
STRAND 66 870 74
COLOUR_TEXT_REGION 66 870 74 870 51
STRAND 81 870 89
COLOUR_TEXT_REGION 81 870 89 870 51
STRAND 94 870 96
COLOUR_TEXT_REGION 94 870 96 870 51
STRAND 101 870 106
COLOUR_TEXT_REGION 101 870 106 870 51
STRAND 4 875 8
COLOUR_TEXT_REGION 4 875 8 875 51
STRAND 12 875 15
COLOUR_TEXT_REGION 12 875 15 875 51
STRAND 20 875 27
COLOUR_TEXT_REGION 20 875 27 875 51
STRAND 35 875 41
COLOUR_TEXT_REGION 35 875 41 875 51
STRAND 58 875 61
COLOUR_TEXT_REGION 58 875 61 875 51
STRAND 66 875 74
COLOUR_TEXT_REGION 66 875 74 875 51
STRAND 81 875 89
COLOUR_TEXT_REGION 81 875 89 875 51
STRAND 94 875 96
COLOUR_TEXT_REGION 94 875 96 875 51
STRAND 101 875 106
COLOUR_TEXT_REGION 101 875 106 875 51
STRAND 4 876 7
COLOUR_TEXT_REGION 4 876 7 876 51
STRAND 11 876 15
COLOUR_TEXT_REGION 11 876 15 876 51
STRAND 20 876 28
COLOUR_TEXT_REGION 20 876 28 876 51
STRAND 34 876 42
COLOUR_TEXT_REGION 34 876 42 876 51
STRAND 57 876 61
COLOUR_TEXT_REGION 57 876 61 876 51
STRAND 67 876 74
COLOUR_TEXT_REGION 67 876 74 876 51
STRAND 82 876 88
COLOUR_TEXT_REGION 82 876 88 876 51
STRAND 94 876 97
COLOUR_TEXT_REGION 94 876 97 876 51
STRAND 101 876 106
COLOUR_TEXT_REGION 101 876 106 876 51