QUERY                  : QMDTEEVREFVGHLERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKERIRVLEEDYLE : QUERY 
UniRef90_UPI000362076E : -VDPGELRRFAHALKIFNGDLRANLSSLHSQLLALDTWRDQEHERFVQEYEETMGVLEKFLDISDEHVPFLTRKAERIEE-YMQ : UniRef90_UPI000362076E
UniRef90_B9XIJ6        : -MDPEEVRRFAEELKRFNADLQTKMGSLHARFASLDTWQDQEHNKFSEEFKQTMKALKKFIDISNQHTPYLMRKAERIEE---- : UniRef90_B9XIJ6
UniRef90_UPI000470CDA9 : --DPEELERFAHSLQLFIALLNDAVGNLNGAFASLDTWQDQKRVRFEEDYKALVQQLQQFNNNASEQVPYLMELASRL-RDYLQ : UniRef90_UPI000470CDA9
UniRef90_X4ZDR6        : --DPDELERFAQSLRHFIDTLNESVNGLNHSFAALDTWQDAKRARFEEEYAALLQQLRMFESSASDQIPYLLTLAARL-RDYLQ : UniRef90_X4ZDR6
UniRef90_V5FD78        : --DPDELDRFAQSLTQFIDTLNDAVNGLNHSFGVLDTWQDEKRASFEEDYNALVQQLSHFEANASEQVPYLHALASRL-RDYLQ : UniRef90_V5FD78
UniRef90_UPI0002B99F11 : QMDTEEVRGFVEHLERFKELLNEKVNSLSNHFHNLELWQDAKRERFSEVVDNLKGTFNEFDEAVQEQIAWLKERIRV------- : UniRef90_UPI0002B99F11
UniRef90_UPI00036819EF : -MDPEEVRRFAKELKHFNAGLQQGMTLLDARFKALDSWQDQEHQRFAEEFSQTIRALKKFVEVSNEHTPFLLRKAQRI-EDYLE : UniRef90_UPI00036819EF
UniRef90_A0A023WSN7    : --DPEELERFAYALQRFTDSLNDSVGALDGAFVSLDTWQDEKRSQFEEEFNMLVQHLHQFNASATEQVPYLIALASRL-RDYLQ : UniRef90_A0A023WSN7
UniRef90_D2R5J2        : -VDPEELRQFAQNLKRFNAQLREKATALGNQLATLSSWRDQEHKKFVDQFETNMKVLMRFTETADEYVPYLLRKATHI-EDYLQ : UniRef90_D2R5J2
UniRef90_UPI00016C3A36 : -VDPAEVRRFASSLKRFNADMQSALAGLHGQLTALDSWRDQEHDRFRQEFEATMLVMERFLTMSEEHVPFLLRKAERIEE---- : UniRef90_UPI00016C3A36
UniRef90_B4D3P7        : -MDPEEVRRFAKELKRFNDDVQTKASALQARFSALSTWQDQEHEKFAEEFITTMKVIKKFTEISEKHTPFLLRKAQRIEE---- : UniRef90_B4D3P7
UniRef90_L0DNY0        : -VNPDELRRFATQLRQFNNDLLGQMTVLHGQLAGLGSWRDREHDKFVEEFEQTLQVVARFVDSTNQHVPFLMRKADRVEE-YLQ : UniRef90_L0DNY0
UniRef90_UPI00029B4B3A : -VDPVDLRRFAALLRDFTTELQSRLSAVNGQMNALSTWRDQEHLKFADEFSQHLKLLARFIEANEQHVPYLMRKAERIEE---- : UniRef90_UPI00029B4B3A
UniRef90_E7ACV6        : -MDPDETEDFTNHLQQFMDDLNEMVRSLNGHFRALDTWDDAKYWEFEEVLKELESFLKHFDEQAEEQVRWLRRKIEE------- : UniRef90_E7ACV6
UniRef90_A6DMA4        : -IDPSQVRAFAAELKNFNQELQNRMLSLRGRYKALETWQDQEHARFAEEFERAMKSLKKFVECSNDQAPLLIRKADKIDE---- : UniRef90_A6DMA4
UniRef90_I2DGR2        : HVNADELEKFAHEIKNFLETQQNATSRLRGAFNRVSSWQDNKCKEFENNFSDLLSRLSRFDDLAQGDINHLKKLIAV------- : UniRef90_I2DGR2
UniRef90_F8KTL5        : -INPDETEDFTNHLQRFMDDLNDMVNDLNTHFRTLETWADPKYLEFEEVLKDLEAFLKRFDAEATEQVRWLRRKIQEARE---- : UniRef90_F8KTL5
UniRef90_E8QYV9        : -VDPAELRRFAQHLKTFRFELEGQLASLHGQLVGLGTWRDREHQKFVEEFEEAIKQIDRSMEVVNQYIPFLLRKAERIEE-YLQ : UniRef90_E8QYV9
UniRef90_V9HJN0        : --DPEEIRSFSNSLEHYLNTVEEETGRLNSAFEQLESWQDQQRTSFEETYKQLINALQNFKENASEQIPHLRTMAEDL------ : UniRef90_V9HJN0
UniRef90_M5S2S0        : -VDPEQLRQFAAHLHRFAEEMKQRSTMLASQMNQLETWRDEQQRKFGEEFTTQMRQISRLIQSTEEHVPYLMRKAEQID----- : UniRef90_M5S2S0
UniRef90_B6BJ57        : QGNPEELELFANQLLNFLETLKDSTNSLNHSFESLDSWQDEKRIAFEDDYKELLSVLAQFENNSLDKVDYLKVLSNRL-RDYL- : UniRef90_B6BJ57
UniRef90_I2DEB3        : QMDTEEVREFVNHLERFKELLNDEVNGLSSHFNNLDSWQDARRDKFSEVLDNLKSTFEK------------------------- : UniRef90_I2DEB3
UniRef90_M5S032        : --DPDQIRQFASQLARFAEELRQRGTGLSAQMNQLESWRDDQQRKFNQEFQDQLRQLQRLVQATDEHVPYLMRKADQLD----- : UniRef90_M5S032
UniRef90_G2M2R5        : ----------------------------------MDSWQDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKERIRVLEEDY-- : UniRef90_G2M2R5
UniRef90_D6LDD3        : --NPEELRNFANTLQKYLENIEEETGVLTSAFSSLDTWQDQQKNKFEEVLKELLAVLKRFEEDASEQIPHLLKMAEDLE----- : UniRef90_D6LDD3

                       : 1---------11--------21--------31--------41--------51--------61--------71--------81-- :
OrigSeq                : QMDTEEVREFVGHLERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKERIRVLEEDYLE : OrigSeq

Jnet                   : ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---- : Jnet
jhmm                   : ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---- : jhmm
jpssm                  : ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH--- : jpssm

Lupas 14               : -----------------cccccccccccccc------------------------------------CCCCCCCCCCCCCC--- : Lupas 14
Lupas 21               : ----------ccccccccccccccccccccc----------------------------------------------------- : Lupas 21
Lupas 28               : ------------------------------------------------------------------------------------ : Lupas 28

Jnet_25                : -B----B--BB--B--BB--B---B--B--BB--B--B----B--B---B--BB-BB--B---B--BB-BB--BB--B---B-- : Jnet_25
Jnet_5                 : ------B--BB--B--B---B---B--B---B-------------B----------B--B-------B--B---B--------- : Jnet_5
Jnet_0                 : -------------B---------------------------------------------------------------------- : Jnet_0
Jnet Rel               : 995799999999999999999999876899875378856899999999999999999998743372199999999999870189 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.