SILENT_MODE
BLOCK_FILE jp_KGyTsEs.concise.blc
MAX_NSEQ 1026
MAX_INPUT_LEN 1028
OUTPUT_FILE jp_KGyTsEs.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 138 1015   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 1016 138 1025 H SPACE
SUB_CHARS 1 1016 138 1025 E SPACE
SUB_CHARS 1 1016 138 1025 - SPACE
STRAND 55 1019 61
COLOUR_TEXT_REGION 55 1019 61 1019 51
STRAND 66 1019 71
COLOUR_TEXT_REGION 66 1019 71 1019 51
HELIX 4 1019 16
COLOUR_TEXT_REGION 4 1019 16 1019 50
HELIX 20 1019 31
COLOUR_TEXT_REGION 20 1019 31 1019 50
HELIX 39 1019 40
COLOUR_TEXT_REGION 39 1019 40 1019 50
HELIX 76 1019 89
COLOUR_TEXT_REGION 76 1019 89 1019 50
HELIX 94 1019 99
COLOUR_TEXT_REGION 94 1019 99 1019 50
HELIX 102 1019 109
COLOUR_TEXT_REGION 102 1019 109 1019 50
HELIX 117 1019 136
COLOUR_TEXT_REGION 117 1019 136 1019 50
STRAND 55 1024 61
COLOUR_TEXT_REGION 55 1024 61 1024 51
STRAND 66 1024 71
COLOUR_TEXT_REGION 66 1024 71 1024 51
HELIX 4 1024 16
COLOUR_TEXT_REGION 4 1024 16 1024 50
HELIX 20 1024 32
COLOUR_TEXT_REGION 20 1024 32 1024 50
HELIX 76 1024 89
COLOUR_TEXT_REGION 76 1024 89 1024 50
HELIX 94 1024 99
COLOUR_TEXT_REGION 94 1024 99 1024 50
HELIX 102 1024 109
COLOUR_TEXT_REGION 102 1024 109 1024 50
HELIX 117 1024 136
COLOUR_TEXT_REGION 117 1024 136 1024 50
STRAND 55 1025 61
COLOUR_TEXT_REGION 55 1025 61 1025 51
STRAND 66 1025 71
COLOUR_TEXT_REGION 66 1025 71 1025 51
HELIX 4 1025 16
COLOUR_TEXT_REGION 4 1025 16 1025 50
HELIX 20 1025 30
COLOUR_TEXT_REGION 20 1025 30 1025 50
HELIX 39 1025 47
COLOUR_TEXT_REGION 39 1025 47 1025 50
HELIX 76 1025 89
COLOUR_TEXT_REGION 76 1025 89 1025 50
HELIX 94 1025 99
COLOUR_TEXT_REGION 94 1025 99 1025 50
HELIX 102 1025 108
COLOUR_TEXT_REGION 102 1025 108 1025 50
HELIX 117 1025 136
COLOUR_TEXT_REGION 117 1025 136 1025 50