QUERY : SAFPVHAAFEKDFLVQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVFEE : QUERY
UniRef90_S5T9L4 : AAFPISSNFEGDFVLQLVSVDTKDTMDQVAEKCAYHSVGRRVTPQPKVMRVRLHQSTECFPREMRVSEAGWRPTETLDIIFAD : UniRef90_S5T9L4
UniRef90_UPI00035E2D8A : ALFPLISNFQYDFVLQLLPVDSDNTMDEIAAAAAHHSVGRRVAPQPGVVRVRRQGASEFFARDCRLSDTDVRPMETLEFIFCE : UniRef90_UPI00035E2D8A
UniRef90_D5WP33 : ALVPVISNFQYDFVLQLVTVDTDNSMDEIAAAASHHSVGRRVAPQPKVIRVRRQGSKQFYPRNAKLAETDIKPMETLEFIFCD : UniRef90_D5WP33
UniRef90_V5PLU3 : ALFPLSSNFEGDFVLQLVAVDTENTMDEVAAAAAHHSVGRRVKARPGILRVRRQGSKECLPRTMKVADSGLKPTECVEVIWE- : UniRef90_V5PLU3
UniRef90_W0TNY9 : ALFPIMSNFERDFVVQLVPVDTEDTMDQVAEKCAYHSLNRRVVPRDKVLRVRKHETGELYPRDMKVADAGLRPTETLDIVYMD : UniRef90_W0TNY9
UniRef90_UPI00045EC22A : ALFPVISNFQHDFVLLLVPVDTENTMDEVAATAAGHSVGVRVAPRPKVVRVRRQGAEDFFPRDMRLAESGIRPMETLEFIFCD : UniRef90_UPI00045EC22A
UniRef90_UPI000465AC52 : ALFPLSSLFEDDFVAQLVPVDTEDNMDEVAQKCAYHSVNRRVLPVEGVMRVKRHSNGEVFPRNMKVQDANLLPTETIEVFY-- : UniRef90_UPI000465AC52
UniRef90_UPI0003B318EF : ALFPLTSNFQEDFVLQLVAVDTDNSMDEVAAAAAVHSVGRRVKPRPGVLRVRRQGTDEAFPRDLKVGDAGLRPMECVEIYWE- : UniRef90_UPI0003B318EF
UniRef90_P95409 : ALIPLISNFEGDFVLQLVPVDTENTMDEVAAAAAHHSVGRRVKPRPGVIRVRKQGSEELIPRTAKISEAGIKPMECLEFVWE- : UniRef90_P95409
UniRef90_A2SIV6 : ALFPLTSKFQGDFVLQLLAVDSADSMDVVAASAARHSIGKRVMSRPGVLRVRRQGTGDSFPRDMSVEDSGLYPTECIEVFWE- : UniRef90_A2SIV6
UniRef90_A0A059KMU7 : ALFPISSAFEGDFCLKLVAVDTEHTMDEVCAAAAHHSINRSVAARPGRVRVRKQGEQAFLPRDMKLADAGIAPMQCLQFMFE- : UniRef90_A0A059KMU7
UniRef90_A2SDY8 : ALFPLTSNFQGDFVLQLLPVDTEHTMDQVAAAAAHHSVGRRVASRPGVMRVRRQGASEPFPRNTTVATSGLAPMECIEIVWE- : UniRef90_A2SDY8
UniRef90_I8TA02 : ALFPMNVNVQGDFVLQLVAVDTDNTMDEVAAAAAHHSVGRRVKRQPGILRVRKQGSEQLLPRDMKVSESGIRPMDCVEVVWE- : UniRef90_I8TA02
UniRef90_M4Z2U8 : ALFPLQANFRGDFVVMLVPVDDGDSMSIVADKVAQHAVGLRVAEKSAAKCV--YYDGRELPSAMTVAQSGIAPMDWIEVAYAE : UniRef90_M4Z2U8
UniRef90_Q9RBP1 : APFPITGRFIGDFVPHLVAVDTDDTWDQIACKIAVHAVGRRIPEPEVSPGYDVLLDGTVMTPDETLGDRSIPPLQWIDVRFRE : UniRef90_Q9RBP1
UniRef90_D9V0Z5 : ATIPLAVHFDGDFVLKLLPADSEHTMDELAAAAAENSVGIHVPDQPGTLRVRRQGDAQPFERTSTVAAAGLEPTECVEVYFE- : UniRef90_D9V0Z5
UniRef90_B9L556 : AILPVQAWFRGDFVVQVVVIDTDDHMPQVAEKVAYHAVGRRVWPRPKPMAV--YYRGERIPDDKTVAEVGIGPMDYLEVGYVD : UniRef90_B9L556
UniRef90_H6MYN1 : -LVPLNAIFSTDFVQILVPVTTADTMDEVAAAVASHSEGRRVRALPHPKVVVYQG--EKMPGHMTVAEAGIQPLDHVAVEYD- : UniRef90_H6MYN1
UniRef90_Q9ZET6 : SLFPIVGRFVGDFVPHLVAVDTSDTIDQIAEKVAVHTVGRRLPPDPTATGYEVLLDGETLDGGATLEAIMTKPLQWFDVRF-- : UniRef90_Q9ZET6
UniRef90_L2TIB2 : ALFPLQGMFDGDFVLMLVPVDDQDTMTQVAEKVAYHAVGHRVPARDRPMQVR-HKSVPVAP-DATVTSAGFGPMDVVEVGY-- : UniRef90_L2TIB2
UniRef90_UPI00035FDFE0 : APFPITGRFVGDFVPHLVAVDTEDTVAEVARKVAVHSVGRRVARPAGEPGYEVLLDDRVLDPALTLAEHGFPPLRWFDVRFR- : UniRef90_UPI00035FDFE0
UniRef90_Q2JGJ1 : ALLPLSAVFEHDFVSLLVAVDDADTVEVVGQKIAHHVVGRRLPASDAPVGIR--HNGQVLAREARIGEAGVGPLDHVEAFFDE : UniRef90_Q2JGJ1
UniRef90_X7ZNS3 : ALLPLTALFEGDVLELLIPVDDADSVESVSAAIAHHVVGHRVAPHDAPIRLR--HNGNVLDPTAGIGASGVGPLDHVEAFYEQ : UniRef90_X7ZNS3
UniRef90_L2THB5 : ----MQGIFDDDFVVMLIPIDDADPMSVVAEKVAHHAAGRRVAPQPGPLRVRFHG--QVLADTATVADAGVAPLDVLQVGYR- : UniRef90_L2THB5
UniRef90_D5WR27 : AVVPLTAAHREDFVVLLVPVEETDTMAQVAEKVAVHTVGVRVAPRPVPLRVRCKG--QVQPDHVTVAQVGLGPMDFVEVFYDE : UniRef90_D5WR27
UniRef90_F4CQX7 : -LVPVNAIFHTDFVQILVPVTTADTIAEVAEKVAYHVEGRRVHKQDAP-KVVFHGGRRLDPR-LTVADAGIGPLDHVRVEYD- : UniRef90_F4CQX7
UniRef90_F4CK64 : APFPIQGIVRGDFVVHLVAVDDQDPMSSVADQVAHHAIGRRLPDTGAPLQV--FVGGRELPASITVAESGLQPLDFVEV---- : UniRef90_F4CK64
UniRef90_F4CQQ2 : -VVPLNAVFADDFVQILVPVTTADTVREVAAAVAHHVEGKRVRALPYEKVV--FHNGRRLPPEMTVAEAGIAPLDHVRVEYD- : UniRef90_F4CQQ2
UniRef90_F8I8D8 : -MVPLVGVFEGDFVAQLFVVEIGDPMSAVAEKLAVHAVNLRVMPEDRPLEVVK--DGQPLPDSMTVREAGLQPMDVVRVRYR- : UniRef90_F8I8D8
UniRef90_UPI000319028C : ------------------PIDSDDTMDVVAGKLAHHSVNRRVAPQNKPLRVRF--NGQVLPTDATPASVGIAPLDFVEAYYQE : UniRef90_UPI000319028C
UniRef90_F8JFV6 : --FPLVINFQGDYGMKLLLVDPQSTIDQVAAKARDTLVGIVVRPLPATLKVRRHGDASVLDGNMKVADAGFVKMEALDIV--- : UniRef90_F8JFV6
UniRef90_F4CTZ5 : SSLAVIGRLEKDAHTRIIDVDTDFTMDQVVEACLAPAVGYQAHPKPGAMRVRDTDDADPFPRSMTVAEARLRHFQQIDIYVSD : UniRef90_F4CTZ5
UniRef90_O07069 : ------------------------------------SVGRRVKARTGILRVRKQGTQEFFPRAMKVADADLRPTECIEIMWE- : UniRef90_O07069
UniRef90_A4WIC3 : SAIPTIFLHEEDFVWQVFFVPAEFTVKQAADFLMSLIVNATVWPKNKEVRIVKYYSGEILDPNAKFGEV-VKPGEPLLLVW-- : UniRef90_A4WIC3
: 1---------11--------21--------31--------41--------51--------61--------71--------81- :
OrigSeq : SAFPVHAAFEKDFLVQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVFEE : OrigSeq
Jnet : --EEEEEEE---EEEEEEEE-----HHHHHHHHHHHH---E-------EEEEEE-----------EEE-------EEEEEE-- : Jnet
jhmm : --EEEEEEEE--EEEEEEEE-----HHHHHHHHHHHH--EEE------EEEEEE---------------------EEEEEE-- : jhmm
jpssm : --EEEEE------EEEEEE------HHHHHHHHHHHH-----------EEEEE-----------EEEE-------EEEEEE-- : jpssm
Lupas 14 : ----------------------------------------------------------------------------------- : Lupas 14
Lupas 21 : ----------------------------------------------------------------------------------- : Lupas 21
Lupas 28 : ----------------------------------------------------------------------------------- : Lupas 28
Jnet_25 : ---BBBBBB--BBBBBBBBBB----B--BB-BBB-BBBBBBBB----BB-BBBB----BB---B-BB-B-B-BB-BBBBBB-- : Jnet_25
Jnet_5 : ---BB-B-----BB--BB-B-----B--BB--B---B----B--------B--------------B----------B-B-B-- : Jnet_5
Jnet_0 : ------B---------------------BB--B----B------------B---------------------------B---- : Jnet_0
Jnet Rel : 98154434217627898741788636899999998751621077777357874167777777632111257777537887379 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.