SILENT_MODE
BLOCK_FILE jp_kWxFm5G.concise.blc
MAX_NSEQ 156
MAX_INPUT_LEN 158
OUTPUT_FILE jp_kWxFm5G.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 102 145   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 146 102 155 H SPACE
SUB_CHARS 1 146 102 155 E SPACE
SUB_CHARS 1 146 102 155 - SPACE
STRAND 13 149 17
COLOUR_TEXT_REGION 13 149 17 149 51
STRAND 38 149 42
COLOUR_TEXT_REGION 38 149 42 149 51
STRAND 47 149 51
COLOUR_TEXT_REGION 47 149 51 149 51
STRAND 55 149 59
COLOUR_TEXT_REGION 55 149 59 149 51
STRAND 76 149 89
COLOUR_TEXT_REGION 76 149 89 149 51
STRAND 93 149 98
COLOUR_TEXT_REGION 93 149 98 149 51
HELIX 23 149 32
COLOUR_TEXT_REGION 23 149 32 149 50
HELIX 60 149 67
COLOUR_TEXT_REGION 60 149 67 149 50
STRAND 13 154 17
COLOUR_TEXT_REGION 13 154 17 154 51
STRAND 38 154 42
COLOUR_TEXT_REGION 38 154 42 154 51
STRAND 47 154 51
COLOUR_TEXT_REGION 47 154 51 154 51
STRAND 55 154 59
COLOUR_TEXT_REGION 55 154 59 154 51
STRAND 76 154 81
COLOUR_TEXT_REGION 76 154 81 154 51
STRAND 83 154 89
COLOUR_TEXT_REGION 83 154 89 154 51
STRAND 93 154 98
COLOUR_TEXT_REGION 93 154 98 154 51
HELIX 23 154 33
COLOUR_TEXT_REGION 23 154 33 154 50
HELIX 60 154 67
COLOUR_TEXT_REGION 60 154 67 154 50
STRAND 13 155 18
COLOUR_TEXT_REGION 13 155 18 155 51
STRAND 38 155 43
COLOUR_TEXT_REGION 38 155 43 155 51
STRAND 47 155 51
COLOUR_TEXT_REGION 47 155 51 155 51
STRAND 55 155 59
COLOUR_TEXT_REGION 55 155 59 155 51
STRAND 77 155 84
COLOUR_TEXT_REGION 77 155 84 155 51
STRAND 86 155 89
COLOUR_TEXT_REGION 86 155 89 155 51
STRAND 93 155 98
COLOUR_TEXT_REGION 93 155 98 155 51
HELIX 23 155 32
COLOUR_TEXT_REGION 23 155 32 155 50
HELIX 60 155 67
COLOUR_TEXT_REGION 60 155 67 155 50