SILENT_MODE
BLOCK_FILE jp_GlAXSXc.concise.blc
MAX_NSEQ 118
MAX_INPUT_LEN 120
OUTPUT_FILE jp_GlAXSXc.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 153 107   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 108 153 117 H SPACE
SUB_CHARS 1 108 153 117 E SPACE
SUB_CHARS 1 108 153 117 - SPACE
STRAND 35 111 42
COLOUR_TEXT_REGION 35 111 42 111 51
STRAND 48 111 55
COLOUR_TEXT_REGION 48 111 55 111 51
STRAND 60 111 67
COLOUR_TEXT_REGION 60 111 67 111 51
STRAND 118 111 125
COLOUR_TEXT_REGION 118 111 125 111 51
STRAND 134 111 140
COLOUR_TEXT_REGION 134 111 140 111 51
STRAND 143 111 148
COLOUR_TEXT_REGION 143 111 148 111 51
HELIX 6 111 11
COLOUR_TEXT_REGION 6 111 11 111 50
HELIX 18 111 25
COLOUR_TEXT_REGION 18 111 25 111 50
HELIX 76 111 84
COLOUR_TEXT_REGION 76 111 84 111 50
HELIX 90 111 97
COLOUR_TEXT_REGION 90 111 97 111 50
STRAND 35 116 42
COLOUR_TEXT_REGION 35 116 42 116 51
STRAND 47 116 55
COLOUR_TEXT_REGION 47 116 55 116 51
STRAND 60 116 70
COLOUR_TEXT_REGION 60 116 70 116 51
STRAND 118 116 125
COLOUR_TEXT_REGION 118 116 125 116 51
STRAND 134 116 140
COLOUR_TEXT_REGION 134 116 140 116 51
STRAND 144 116 148
COLOUR_TEXT_REGION 144 116 148 116 51
HELIX 6 116 10
COLOUR_TEXT_REGION 6 116 10 116 50
HELIX 18 116 25
COLOUR_TEXT_REGION 18 116 25 116 50
HELIX 78 116 83
COLOUR_TEXT_REGION 78 116 83 116 50
HELIX 90 116 97
COLOUR_TEXT_REGION 90 116 97 116 50
STRAND 36 117 41
COLOUR_TEXT_REGION 36 117 41 117 51
STRAND 60 117 63
COLOUR_TEXT_REGION 60 117 63 117 51
STRAND 119 117 124
COLOUR_TEXT_REGION 119 117 124 117 51
STRAND 135 117 139
COLOUR_TEXT_REGION 135 117 139 117 51
STRAND 143 117 147
COLOUR_TEXT_REGION 143 117 147 117 51
HELIX 6 117 13
COLOUR_TEXT_REGION 6 117 13 117 50
HELIX 18 117 26
COLOUR_TEXT_REGION 18 117 26 117 50
HELIX 64 117 64
COLOUR_TEXT_REGION 64 117 64 117 50
HELIX 75 117 85
COLOUR_TEXT_REGION 75 117 85 117 50
HELIX 90 117 96
COLOUR_TEXT_REGION 90 117 96 117 50