SILENT_MODE BLOCK_FILE jp_Z2cmuCw.concise.blc MAX_NSEQ 1460 MAX_INPUT_LEN 1462 OUTPUT_FILE jp_Z2cmuCw.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 184 1449 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 1450 184 1459 H SPACE SUB_CHARS 1 1450 184 1459 E SPACE SUB_CHARS 1 1450 184 1459 - SPACE STRAND 99 1453 103 COLOUR_TEXT_REGION 99 1453 103 1453 51 STRAND 110 1453 114 COLOUR_TEXT_REGION 110 1453 114 1453 51 STRAND 145 1453 146 COLOUR_TEXT_REGION 145 1453 146 1453 51 STRAND 153 1453 159 COLOUR_TEXT_REGION 153 1453 159 1453 51 STRAND 166 1453 168 COLOUR_TEXT_REGION 166 1453 168 1453 51 HELIX 11 1453 18 COLOUR_TEXT_REGION 11 1453 18 1453 50 HELIX 37 1453 46 COLOUR_TEXT_REGION 37 1453 46 1453 50 HELIX 56 1453 76 COLOUR_TEXT_REGION 56 1453 76 1453 50 HELIX 84 1453 94 COLOUR_TEXT_REGION 84 1453 94 1453 50 HELIX 121 1453 137 COLOUR_TEXT_REGION 121 1453 137 1453 50 HELIX 174 1453 182 COLOUR_TEXT_REGION 174 1453 182 1453 50 STRAND 99 1458 103 COLOUR_TEXT_REGION 99 1458 103 1458 51 STRAND 110 1458 114 COLOUR_TEXT_REGION 110 1458 114 1458 51 STRAND 145 1458 147 COLOUR_TEXT_REGION 145 1458 147 1458 51 STRAND 153 1458 159 COLOUR_TEXT_REGION 153 1458 159 1458 51 STRAND 167 1458 168 COLOUR_TEXT_REGION 167 1458 168 1458 51 HELIX 11 1458 18 COLOUR_TEXT_REGION 11 1458 18 1458 50 HELIX 37 1458 46 COLOUR_TEXT_REGION 37 1458 46 1458 50 HELIX 56 1458 76 COLOUR_TEXT_REGION 56 1458 76 1458 50 HELIX 84 1458 94 COLOUR_TEXT_REGION 84 1458 94 1458 50 HELIX 121 1458 136 COLOUR_TEXT_REGION 121 1458 136 1458 50 HELIX 174 1458 182 COLOUR_TEXT_REGION 174 1458 182 1458 50 STRAND 99 1459 103 COLOUR_TEXT_REGION 99 1459 103 1459 51 STRAND 109 1459 114 COLOUR_TEXT_REGION 109 1459 114 1459 51 STRAND 153 1459 158 COLOUR_TEXT_REGION 153 1459 158 1459 51 STRAND 165 1459 168 COLOUR_TEXT_REGION 165 1459 168 1459 51 HELIX 11 1459 19 COLOUR_TEXT_REGION 11 1459 19 1459 50 HELIX 37 1459 45 COLOUR_TEXT_REGION 37 1459 45 1459 50 HELIX 57 1459 77 COLOUR_TEXT_REGION 57 1459 77 1459 50 HELIX 84 1459 93 COLOUR_TEXT_REGION 84 1459 93 1459 50 HELIX 121 1459 137 COLOUR_TEXT_REGION 121 1459 137 1459 50 HELIX 174 1459 182 COLOUR_TEXT_REGION 174 1459 182 1459 50