SILENT_MODE BLOCK_FILE jp_fCyogmd.concise.blc MAX_NSEQ 660 MAX_INPUT_LEN 662 OUTPUT_FILE jp_fCyogmd.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 315 649 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 650 315 659 H SPACE SUB_CHARS 1 650 315 659 E SPACE SUB_CHARS 1 650 315 659 - SPACE STRAND 52 653 53 COLOUR_TEXT_REGION 52 653 53 653 51 STRAND 62 653 66 COLOUR_TEXT_REGION 62 653 66 653 51 STRAND 90 653 94 COLOUR_TEXT_REGION 90 653 94 653 51 STRAND 122 653 124 COLOUR_TEXT_REGION 122 653 124 653 51 STRAND 166 653 169 COLOUR_TEXT_REGION 166 653 169 653 51 STRAND 173 653 177 COLOUR_TEXT_REGION 173 653 177 653 51 STRAND 247 653 250 COLOUR_TEXT_REGION 247 653 250 653 51 STRAND 259 653 262 COLOUR_TEXT_REGION 259 653 262 653 51 STRAND 267 653 272 COLOUR_TEXT_REGION 267 653 272 653 51 STRAND 284 653 290 COLOUR_TEXT_REGION 284 653 290 653 51 STRAND 295 653 302 COLOUR_TEXT_REGION 295 653 302 653 51 HELIX 13 653 24 COLOUR_TEXT_REGION 13 653 24 653 50 HELIX 31 653 47 COLOUR_TEXT_REGION 31 653 47 653 50 HELIX 72 653 81 COLOUR_TEXT_REGION 72 653 81 653 50 HELIX 105 653 117 COLOUR_TEXT_REGION 105 653 117 653 50 HELIX 141 653 146 COLOUR_TEXT_REGION 141 653 146 653 50 HELIX 151 653 161 COLOUR_TEXT_REGION 151 653 161 653 50 HELIX 188 653 190 COLOUR_TEXT_REGION 188 653 190 653 50 HELIX 233 653 242 COLOUR_TEXT_REGION 233 653 242 653 50 STRAND 51 658 55 COLOUR_TEXT_REGION 51 658 55 658 51 STRAND 62 658 67 COLOUR_TEXT_REGION 62 658 67 658 51 STRAND 91 658 93 COLOUR_TEXT_REGION 91 658 93 658 51 STRAND 122 658 125 COLOUR_TEXT_REGION 122 658 125 658 51 STRAND 166 658 169 COLOUR_TEXT_REGION 166 658 169 658 51 STRAND 173 658 177 COLOUR_TEXT_REGION 173 658 177 658 51 STRAND 228 658 231 COLOUR_TEXT_REGION 228 658 231 658 51 STRAND 247 658 250 COLOUR_TEXT_REGION 247 658 250 658 51 STRAND 259 658 262 COLOUR_TEXT_REGION 259 658 262 658 51 STRAND 267 658 272 COLOUR_TEXT_REGION 267 658 272 658 51 STRAND 284 658 290 COLOUR_TEXT_REGION 284 658 290 658 51 STRAND 295 658 302 COLOUR_TEXT_REGION 295 658 302 658 51 HELIX 13 658 24 COLOUR_TEXT_REGION 13 658 24 658 50 HELIX 31 658 47 COLOUR_TEXT_REGION 31 658 47 658 50 HELIX 72 658 81 COLOUR_TEXT_REGION 72 658 81 658 50 HELIX 105 658 117 COLOUR_TEXT_REGION 105 658 117 658 50 HELIX 141 658 147 COLOUR_TEXT_REGION 141 658 147 658 50 HELIX 150 658 161 COLOUR_TEXT_REGION 150 658 161 658 50 HELIX 188 658 191 COLOUR_TEXT_REGION 188 658 191 658 50 HELIX 233 658 242 COLOUR_TEXT_REGION 233 658 242 658 50 STRAND 61 659 66 COLOUR_TEXT_REGION 61 659 66 659 51 STRAND 89 659 94 COLOUR_TEXT_REGION 89 659 94 659 51 STRAND 166 659 168 COLOUR_TEXT_REGION 166 659 168 659 51 STRAND 174 659 176 COLOUR_TEXT_REGION 174 659 176 659 51 STRAND 259 659 263 COLOUR_TEXT_REGION 259 659 263 659 51 STRAND 267 659 272 COLOUR_TEXT_REGION 267 659 272 659 51 STRAND 283 659 290 COLOUR_TEXT_REGION 283 659 290 659 51 STRAND 295 659 302 COLOUR_TEXT_REGION 295 659 302 659 51 HELIX 13 659 24 COLOUR_TEXT_REGION 13 659 24 659 50 HELIX 31 659 48 COLOUR_TEXT_REGION 31 659 48 659 50 HELIX 72 659 81 COLOUR_TEXT_REGION 72 659 81 659 50 HELIX 107 659 117 COLOUR_TEXT_REGION 107 659 117 659 50 HELIX 141 659 145 COLOUR_TEXT_REGION 141 659 145 659 50 HELIX 155 659 161 COLOUR_TEXT_REGION 155 659 161 659 50 HELIX 233 659 242 COLOUR_TEXT_REGION 233 659 242 659 50 HELIX 246 659 249 COLOUR_TEXT_REGION 246 659 249 659 50