SILENT_MODE
BLOCK_FILE jp_tjh33NZ.concise.blc
MAX_NSEQ 791
MAX_INPUT_LEN 793
OUTPUT_FILE jp_tjh33NZ.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 177 780   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 781 177 790 H SPACE
SUB_CHARS 1 781 177 790 E SPACE
SUB_CHARS 1 781 177 790 - SPACE
STRAND 12 784 16
COLOUR_TEXT_REGION 12 784 16 784 51
STRAND 62 784 68
COLOUR_TEXT_REGION 62 784 68 784 51
STRAND 120 784 123
COLOUR_TEXT_REGION 120 784 123 784 51
STRAND 146 784 150
COLOUR_TEXT_REGION 146 784 150 784 51
STRAND 156 784 158
COLOUR_TEXT_REGION 156 784 158 784 51
STRAND 164 784 168
COLOUR_TEXT_REGION 164 784 168 784 51
STRAND 173 784 175
COLOUR_TEXT_REGION 173 784 175 784 51
HELIX 18 784 27
COLOUR_TEXT_REGION 18 784 27 784 50
HELIX 40 784 57
COLOUR_TEXT_REGION 40 784 57 784 50
HELIX 76 784 82
COLOUR_TEXT_REGION 76 784 82 784 50
HELIX 98 784 115
COLOUR_TEXT_REGION 98 784 115 784 50
HELIX 130 784 141
COLOUR_TEXT_REGION 130 784 141 784 50
STRAND 12 789 16
COLOUR_TEXT_REGION 12 789 16 789 51
STRAND 39 789 41
COLOUR_TEXT_REGION 39 789 41 789 51
STRAND 62 789 68
COLOUR_TEXT_REGION 62 789 68 789 51
STRAND 120 789 123
COLOUR_TEXT_REGION 120 789 123 789 51
STRAND 145 789 150
COLOUR_TEXT_REGION 145 789 150 789 51
STRAND 156 789 159
COLOUR_TEXT_REGION 156 789 159 789 51
STRAND 164 789 168
COLOUR_TEXT_REGION 164 789 168 789 51
STRAND 173 789 176
COLOUR_TEXT_REGION 173 789 176 789 51
HELIX 19 789 27
COLOUR_TEXT_REGION 19 789 27 789 50
HELIX 42 789 57
COLOUR_TEXT_REGION 42 789 57 789 50
HELIX 76 789 82
COLOUR_TEXT_REGION 76 789 82 789 50
HELIX 92 789 115
COLOUR_TEXT_REGION 92 789 115 789 50
HELIX 130 789 141
COLOUR_TEXT_REGION 130 789 141 789 50
STRAND 12 790 16
COLOUR_TEXT_REGION 12 790 16 790 51
STRAND 62 790 68
COLOUR_TEXT_REGION 62 790 68 790 51
STRAND 120 790 123
COLOUR_TEXT_REGION 120 790 123 790 51
STRAND 146 790 149
COLOUR_TEXT_REGION 146 790 149 790 51
STRAND 164 790 168
COLOUR_TEXT_REGION 164 790 168 790 51
STRAND 174 790 174
COLOUR_TEXT_REGION 174 790 174 790 51
HELIX 17 790 27
COLOUR_TEXT_REGION 17 790 27 790 50
HELIX 39 790 56
COLOUR_TEXT_REGION 39 790 56 790 50
HELIX 76 790 79
COLOUR_TEXT_REGION 76 790 79 790 50
HELIX 100 790 115
COLOUR_TEXT_REGION 100 790 115 790 50
HELIX 131 790 140
COLOUR_TEXT_REGION 131 790 140 790 50
HELIX 155 790 158
COLOUR_TEXT_REGION 155 790 158 790 50