SILENT_MODE
BLOCK_FILE jp_YwRu_LB.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_YwRu_LB.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 125 36   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 37 125 46 H SPACE
SUB_CHARS 1 37 125 46 E SPACE
SUB_CHARS 1 37 125 46 - SPACE
STRAND 10 40 13
COLOUR_TEXT_REGION 10 40 13 40 51
STRAND 25 40 27
COLOUR_TEXT_REGION 25 40 27 40 51
STRAND 32 40 34
COLOUR_TEXT_REGION 32 40 34 40 51
HELIX 5 40 9
COLOUR_TEXT_REGION 5 40 9 40 50
HELIX 46 40 53
COLOUR_TEXT_REGION 46 40 53 40 50
HELIX 65 40 78
COLOUR_TEXT_REGION 65 40 78 40 50
HELIX 85 40 96
COLOUR_TEXT_REGION 85 40 96 40 50
HELIX 106 40 122
COLOUR_TEXT_REGION 106 40 122 40 50
STRAND 9 45 13
COLOUR_TEXT_REGION 9 45 13 45 51
STRAND 25 45 27
COLOUR_TEXT_REGION 25 45 27 45 51
STRAND 32 45 34
COLOUR_TEXT_REGION 32 45 34 45 51
HELIX 5 45 7
COLOUR_TEXT_REGION 5 45 7 45 50
HELIX 46 45 53
COLOUR_TEXT_REGION 46 45 53 45 50
HELIX 65 45 78
COLOUR_TEXT_REGION 65 45 78 45 50
HELIX 85 45 96
COLOUR_TEXT_REGION 85 45 96 45 50
HELIX 106 45 122
COLOUR_TEXT_REGION 106 45 122 45 50
STRAND 11 46 13
COLOUR_TEXT_REGION 11 46 13 46 51
STRAND 25 46 27
COLOUR_TEXT_REGION 25 46 27 46 51
STRAND 32 46 34
COLOUR_TEXT_REGION 32 46 34 46 51
HELIX 5 46 10
COLOUR_TEXT_REGION 5 46 10 46 50
HELIX 46 46 53
COLOUR_TEXT_REGION 46 46 53 46 50
HELIX 60 46 62
COLOUR_TEXT_REGION 60 46 62 46 50
HELIX 65 46 77
COLOUR_TEXT_REGION 65 46 77 46 50
HELIX 85 46 96
COLOUR_TEXT_REGION 85 46 96 46 50
HELIX 107 46 121
COLOUR_TEXT_REGION 107 46 121 46 50