QUERY : KSGSAEIDCMTKILKGDKKDNVASVKVRSDFWFTRVEGERTPSMKTSIVEAIANDREQAKVLLTESEYNRYKENLVLIDFDYIPDNIASNIVNYYNSYKLPPRGKIYSYFVKAGLSKLTNSINEF : QUERY
UniRef90_W6AT47 : KTGSPALDCMMKVVKGDKKDNVAAITVRSDFWYTRVDGERTPPTKTAFVEQCC-DAEDITTILEGEQLKRFYENRVLIDFDYIPEDIANQILDYYNSYKVPPRGKIYPYFVKSGLSKLTKNVNDF : UniRef90_W6AT47
UniRef90_K4I2J9 : KTGDAELECLTKVLKGDRKDNIASVKVRSDFWYTKIDGERTPSFSTKLLEQCLDGPEGMKTLLTEAEYNRYLENRVLIDFSYIPEEIAKPIIEYYELYKTPPRGKIYSYFVKSGLSKLTNRINEF : UniRef90_K4I2J9
UniRef90_Q56EE6 : KNGSPKHDLFYKIIKGDGKDGVAGIKCRSTYVIDRVEGERAPPCSAKWIESLVQSEDPRAALENEEWQKRWDENVKLLDLSQIPDHVAEKILTSYNNCTVNPRGKLYSYFVKNRLTKLLTKVNQF : UniRef90_Q56EE6
UniRef90_D7RMP4 : KSGDALLDCVTKVVKGDRKDNVASIKVRGDYWLTMVEGERTPSTRAKELEAIAYDHDIIKTLLTEEQYERFCENQILIDMDFIPDDIVALITERYNTYNKPSKSKVYPYFVKSGLSKLTATVADF : UniRef90_D7RMP4
UniRef90_E5EZ12 : KTGSPELDCMVKIIKGDRKDCVASIKVRSDFYHTMVEGERTPPTRMDFIESIAGSDEERAKLMTEEQYKRFLENRVLIDFDYIREDIKDEIFNQFTNNTPAPRGKMYKYFVKNGLVKFIKDLDKF : UniRef90_E5EZ12
UniRef90_C4MZ67 : KYGSPYKDLMVKCVKGDAKDGVASIKCRSDFIISRLEGERAKPIATKWLEQIF-DAEDPKSLMTEEEALRFDENRELIDFEFIPDNIEYEILLAWEKSKPAPRGKIYNYFVTNALVKMLQKIGEF : UniRef90_C4MZ67
UniRef90_D5JF93 : KYGSPRNDLRYKNIKGDKKDSIACIKIRNDYIVTKVEGERAPAVKSSELEAWL-EADDPTTLMTPEWAARYKENEELRDFEFIPKDIENSIIEAYNTPKSGSKAKMERYFMDNKLSRMFEKLSDF : UniRef90_D5JF93
UniRef90_D9I6H8 : KFGSSHMDLMVKIVKGDKKDGVSPIQTRNDFYVNPLEGQRAPPAATKWIESIADDEQIEKLLNDGTLWKRFKENRDLIDLSRIPDVYQEQIREMYENAVPASKGKMYKYFIRSGLSKLLKDIDQF : UniRef90_D9I6H8
UniRef90_Q7Y4R2 : KNGSAEIDCMTKILKGDRKDGVASVRVRGDFWFTRVEGERTPSMKTTIIEALANDRSQAEVLLSAEEYKRYQENLVLIDFDYIPDNIASTIIEYYNSYQPQPKGKIYSYL--------------- : UniRef90_Q7Y4R2
UniRef90_Q76YB3 : KEGTWRKDLITKIIKGDGGDGIANIKSRSDYILTKLDGERQKSISSKLL-AQAFEEKDPSVLFTGDEFTRYNENRELVDFEMIPDNIRQAIITEFETIKVPGRSKIYPYFVKKAIKKLLDHVNEF : UniRef90_Q76YB3
UniRef90_A0A023W6V7 : KNGSARLDLFHKLLKGDRKDSVASIRVRNDFWANRVEGERTPAMKAKVIEECADGYDQIESILKEAYPNRFKENEIMIDMSKMPADIKSSIIEKFEQYQLAPRSRIYSYFVKCGLAKLMNNINEF : UniRef90_A0A023W6V7
UniRef90_Q6WIF0 : KHGSPEMDIMYKCIKGDKKDGIAPLKAPSDH-YTHGDGRRAPSVRKEELRTLMTSPEELKKLLTDEQYARYEENRKLLDFAFIPEHISDSIIEQFETQKPAPRSKIMMYFASKKLDKLIESMSEF : UniRef90_Q6WIF0
UniRef90_E5E4L0 : KTKSPEMDCMVKILKGDRKDCVAAIKVRGDFWLNYVDVERTPPTSTSYIEAMVGKTDDFEPFINDNQFIRFKQNRVLIDFDYIRQDMVDAILETYKNYKPAPRGKMYGYFVKSGMSKLLKDINQF : UniRef90_E5E4L0
UniRef90_E5EQ24 : KTGSPEEDCLTKVMKGDRKDCVASIKVRGDFWLNYNVGERTPQTSPKFVTELVGKSDEESKLIAELWMDRFRRNRVLIDFDHIREDIREAILEEYRTFTPAPRGKMYSYFVKSKLTKLIPHINNF : UniRef90_E5EQ24
UniRef90_E5DRN6 : EYGSPERDLLVKIIKGDRKDTISNIFSVSDHIISSDKNQKQ--VRKQLLSSVFESKD-PRSLFTGDELKRYNENEILVDLDKIPDDISKKIIEAYNTYKPAPRGRLTNYFITHGMADLIGKESEF : UniRef90_E5DRN6
UniRef90_W0B4P0 : KTGSPEEDCLTKIIKGDKKDCVASTKVRGDYFLTATSIERTPPTYEAFIKACVGKTDDEKNLLAKIQFHRFTQNRVLIDFNYIRQDIQDAILEAYKTSTPAPRGKIYSYFVKSGLTKLLPDINAF : UniRef90_W0B4P0
UniRef90_I6WMR2 : EHGSAQRDLLYKIVKGDTKDSIANIYSPSDLIYEKEDRVRQKSIRKELLASVFTAKE-PKSLFEGDVLERFEENEKLIDFNFIPDDISAKILTEYHSFKVPARGKITNYFISSGMSEMIGKESEF : UniRef90_I6WMR2
UniRef90_I3ULK9 : ECPDPHLYILEHIIKGDKSDGIPNC-LSPDDTFTK-SGRQRPISKKNFSLWLDKSPEQ---FCNTEQMSYYNRNSTLIDFKYIPKDIEEKIIEHYDNAARNNRRKVYEYFVSHQLLELLNHVGDF : UniRef90_I3ULK9
UniRef90_E3SPV7 : -FDDPHLFIKEHIIKGDKSDGIPNF-LSADDCF--VKGERQRPISQKNL-AKWVDMEPSSFCMNDTQLANYHRNRLLIDFDYVPKEIEQQILDEFNSLNIDGKQVPLEYFQQHQLNDLMQE---- : UniRef90_E3SPV7
UniRef90_Q5GQF2 : -YDNPHAFIKEHILKGDKSDGIPNF-LSPDDCF--VKGERQKPISQKNLTKWI-DQQPHQFCQTKEQLENYHRNQRLIDFDCIPTEIEDKIMTEFNSLNISGKKVPLEYFQEHQLNDLMQD---- : UniRef90_Q5GQF2
UniRef90_X0WI43 : KCKDPVSFLKEHTLRGDTSDGVPNFLSADDCFVT--DGKRQKPISTKKLETWM--KHDPEDFCNDIQLSYLDRNRRMVDFAYIPKDIQDQVMERFEIDREADRGKIFPYMVRHRLTHLLSCIQEF : UniRef90_X0WI43
UniRef90_I7KRG1 : --------------------NVASIKVRGDFHTSKVEGERQPSIKSSLLDLIADDDSTIEQLLTSEEWVRYKENRILIDMDYIDEDISALILKRYNSYVPAKRNKIYSYLVKNGLSKLTQHANDF : UniRef90_I7KRG1
UniRef90_M4QF54 : -HDDPWQYIKEHVMRGDKSDGIPNFLSDDD---TFVAGVRQKPISQKKV-AKWVTQEPSQFCDNTQQLANYHRNRNLIDFDCVPEEIEQKILDEYNSINISGKKVPLEYFKEHQLNDLLQE---- : UniRef90_M4QF54
UniRef90_S5MB93 : ---NADRYLFEHILRGDTGDGIPNI-LSPDNSF--VIGQRQKPVTQK----RVDDWDWCTDFMKEIELRGFKRNEMLIDLKQVPENIKEQIITKYQEPNTKNRSRLMNYFMKHNLKMLMESLSDF : UniRef90_S5MB93
UniRef90_M1IPH6 : ETQNPQEYIFEHIMRGDTSDGIPNFLSPDDTFVNKIKQKPIQKKKSYWIDTLMKG-EDPKTFCNEYHYRNYQRNQRLIDFDYIPDDMEEDIYNTYKNIKVQSKQKILPYLINNDLKELIGKIEEF : UniRef90_M1IPH6
UniRef90_UPI00035E6C4A : ---NPSLYIREHILKGDRSDGIPNV-LSDDNVF--IEGRRQRPLSKKKIEAWCNE---IVPTFNDEEQKNYERNKTLIDLNCIPKELEDKINREFENFEVATRDKILGYFINKKLKTLIESIDEF : UniRef90_UPI00035E6C4A
UniRef90_F5B3V3 : KEEYPIFYLQEHIIRGDRSDGIPNILTCDDAIVNH---KPQKKMSAEKIQTLA--TMDPKNFNNFVRIRNWKRNAQLIDFQYIPQAIRDRILTIYHKAVIPT-GISLEYFSQHNITDIL---SEF : UniRef90_F5B3V3
UniRef90_M4M9S2 : --DNPVKHEFDLIIKGDKADGIPNIFCDDDFYMVKQSGERAPSVSKKLLDDFWGSEDDIKMYLDKDTYTNFCRNRKLISLNEIPDVIRDAVLTAYNTAGRNGIMKTLGYMQQNNMHILAKEIKGF : UniRef90_M4M9S2
UniRef90_G8GJ59 : --------LTMHILLGDKADNIPSITFTPDFIFNKLEISKTQSEKSPFKPAYFGEIGAKRFLENLNEYDNFVRNKTLIDFREIPDNVKESIIEQYNLEKPTDLNNLLKFFLKYNCKKHSDSIASF : UniRef90_G8GJ59
UniRef90_R4TQU4 : ----ADKNLFYKIVLGDKSDCIPPVFS---------------KCGPKTAEKYYLDRDLFKAIIKENAQENYKRNKTLVCFTQIPTDLVECFIETYK----------------------------- : UniRef90_R4TQU4
UniRef90_E3T4D1 : -----EDKLRLKIINGDKSDNIPSI-------FPKSRKEVSLKTRKLVKESISAMNEFFEN--NPEIKSKFKLNEKLIDFNKIPKKIQTPVIKKFKKIEI------------------------- : UniRef90_E3T4D1
UniRef90_UPI00037ED7D5 : -FKDAEKDLFCKIVSGDKSDGIPSVF---------------KKCGIKTAEKYWNDKEKFNTKLDLDAVEQYELNKQIIDFNNIP----------------------------------------- : UniRef90_UPI00037ED7D5
: 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-- :
OrigSeq : KSGSAEIDCMTKILKGDKKDNVASVKVRSDFWFTRVEGERTPSMKTSIVEAIANDREQAKVLLTESEYNRYKENLVLIDFDYIPDNIASNIVNYYNSYKLPPRGKIYSYFVKAGLSKLTNSINEF : OrigSeq
Jnet : ----HHHHHEEEE-----------EEE----EEE-----------HHHHHHHH-----------HHHHHHHHHHHHHH------HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH--- : Jnet
jhmm : ----HHH-EEEEE-----------EEE----EEE-----------HHHHHHHH-----------HHHHHHHHHHHHHH------HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH--- : jhmm
jpssm : ----HHHHHHEEE-----------EEE----EEE-----------HHHHHHHH------HHH--HHHHHHHHHHHHH-------HHHHHHHHHHHH----------HHHHHHHHHHHHHHH---- : jpssm
Lupas 14 : ----------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21 : ----------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28 : ----------------------------------------------------------------------------------------------------------------------------- : Lupas 28
Jnet_25 : ----B---BBB-BB-BB---BBBBB-BB-BBBB----------B---BB--BB-----B--BB---BB--B--B--BB-B--B---B---BB--B----------BB-BBB---B--BB--B--- : Jnet_25
Jnet_5 : --------B---BB-------BB-B-B---------------------B---------------------------B-----B---B---B--------------B---BB---B--B------- : Jnet_5
Jnet_0 : --------B---------------------------------------------------------------------------------B-----------------------B---------- : Jnet_0
Jnet Rel : 99862320221240577777776425436744752446777775278988862478750223327888886665653077666378999999986236788777612899997467876520799 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.