SILENT_MODE
BLOCK_FILE jp_azu_1dz.concise.blc
MAX_NSEQ 801
MAX_INPUT_LEN 803
OUTPUT_FILE jp_azu_1dz.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 254 790   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 791 254 800 H SPACE
SUB_CHARS 1 791 254 800 E SPACE
SUB_CHARS 1 791 254 800 - SPACE
HELIX 8 794 23
COLOUR_TEXT_REGION 8 794 23 794 50
HELIX 27 794 33
COLOUR_TEXT_REGION 27 794 33 794 50
HELIX 39 794 64
COLOUR_TEXT_REGION 39 794 64 794 50
HELIX 70 794 84
COLOUR_TEXT_REGION 70 794 84 794 50
HELIX 92 794 102
COLOUR_TEXT_REGION 92 794 102 794 50
HELIX 107 794 111
COLOUR_TEXT_REGION 107 794 111 794 50
HELIX 117 794 131
COLOUR_TEXT_REGION 117 794 131 794 50
HELIX 137 794 162
COLOUR_TEXT_REGION 137 794 162 794 50
HELIX 173 794 179
COLOUR_TEXT_REGION 173 794 179 794 50
HELIX 181 794 197
COLOUR_TEXT_REGION 181 794 197 794 50
HELIX 200 794 229
COLOUR_TEXT_REGION 200 794 229 794 50
HELIX 8 799 23
COLOUR_TEXT_REGION 8 799 23 799 50
HELIX 27 799 33
COLOUR_TEXT_REGION 27 799 33 799 50
HELIX 39 799 64
COLOUR_TEXT_REGION 39 799 64 799 50
HELIX 70 799 84
COLOUR_TEXT_REGION 70 799 84 799 50
HELIX 92 799 102
COLOUR_TEXT_REGION 92 799 102 799 50
HELIX 107 799 111
COLOUR_TEXT_REGION 107 799 111 799 50
HELIX 118 799 131
COLOUR_TEXT_REGION 118 799 131 799 50
HELIX 136 799 162
COLOUR_TEXT_REGION 136 799 162 799 50
HELIX 173 799 197
COLOUR_TEXT_REGION 173 799 197 799 50
HELIX 200 799 228
COLOUR_TEXT_REGION 200 799 228 799 50
STRAND 250 800 251
COLOUR_TEXT_REGION 250 800 251 800 51
HELIX 8 800 23
COLOUR_TEXT_REGION 8 800 23 800 50
HELIX 27 800 33
COLOUR_TEXT_REGION 27 800 33 800 50
HELIX 39 800 65
COLOUR_TEXT_REGION 39 800 65 800 50
HELIX 70 800 83
COLOUR_TEXT_REGION 70 800 83 800 50
HELIX 93 800 102
COLOUR_TEXT_REGION 93 800 102 800 50
HELIX 108 800 110
COLOUR_TEXT_REGION 108 800 110 800 50
HELIX 117 800 132
COLOUR_TEXT_REGION 117 800 132 800 50
HELIX 137 800 162
COLOUR_TEXT_REGION 137 800 162 800 50
HELIX 173 800 178
COLOUR_TEXT_REGION 173 800 178 800 50
HELIX 183 800 197
COLOUR_TEXT_REGION 183 800 197 800 50
HELIX 200 800 229
COLOUR_TEXT_REGION 200 800 229 800 50