SILENT_MODE BLOCK_FILE jp_j3m51Zx.concise.blc MAX_NSEQ 164 MAX_INPUT_LEN 166 OUTPUT_FILE jp_j3m51Zx.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 91 153 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 154 91 163 H SPACE SUB_CHARS 1 154 91 163 E SPACE SUB_CHARS 1 154 91 163 - SPACE STRAND 8 157 9 COLOUR_TEXT_REGION 8 157 9 157 51 STRAND 14 157 17 COLOUR_TEXT_REGION 14 157 17 157 51 STRAND 25 157 27 COLOUR_TEXT_REGION 25 157 27 157 51 STRAND 49 157 53 COLOUR_TEXT_REGION 49 157 53 157 51 STRAND 60 157 65 COLOUR_TEXT_REGION 60 157 65 157 51 STRAND 74 157 76 COLOUR_TEXT_REGION 74 157 76 157 51 STRAND 83 157 84 COLOUR_TEXT_REGION 83 157 84 157 51 HELIX 32 157 41 COLOUR_TEXT_REGION 32 157 41 157 50 STRAND 8 162 10 COLOUR_TEXT_REGION 8 162 10 162 51 STRAND 14 162 16 COLOUR_TEXT_REGION 14 162 16 162 51 STRAND 24 162 27 COLOUR_TEXT_REGION 24 162 27 162 51 STRAND 49 162 53 COLOUR_TEXT_REGION 49 162 53 162 51 STRAND 60 162 65 COLOUR_TEXT_REGION 60 162 65 162 51 STRAND 74 162 76 COLOUR_TEXT_REGION 74 162 76 162 51 HELIX 32 162 41 COLOUR_TEXT_REGION 32 162 41 162 50 STRAND 14 163 17 COLOUR_TEXT_REGION 14 163 17 163 51 STRAND 60 163 65 COLOUR_TEXT_REGION 60 163 65 163 51 STRAND 73 163 77 COLOUR_TEXT_REGION 73 163 77 163 51 STRAND 82 163 84 COLOUR_TEXT_REGION 82 163 84 163 51 HELIX 32 163 41 COLOUR_TEXT_REGION 32 163 41 163 50 HELIX 49 163 53 COLOUR_TEXT_REGION 49 163 53 163 50