SILENT_MODE
BLOCK_FILE jp_RvgJ1fb.concise.blc
MAX_NSEQ 841
MAX_INPUT_LEN 843
OUTPUT_FILE jp_RvgJ1fb.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 144 830   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 831 144 840 H SPACE
SUB_CHARS 1 831 144 840 E SPACE
SUB_CHARS 1 831 144 840 - SPACE
STRAND 3 834 9
COLOUR_TEXT_REGION 3 834 9 834 51
STRAND 13 834 18
COLOUR_TEXT_REGION 13 834 18 834 51
STRAND 39 834 47
COLOUR_TEXT_REGION 39 834 47 834 51
STRAND 51 834 56
COLOUR_TEXT_REGION 51 834 56 834 51
STRAND 63 834 64
COLOUR_TEXT_REGION 63 834 64 834 51
STRAND 71 834 81
COLOUR_TEXT_REGION 71 834 81 834 51
STRAND 87 834 96
COLOUR_TEXT_REGION 87 834 96 834 51
STRAND 101 834 107
COLOUR_TEXT_REGION 101 834 107 834 51
STRAND 112 834 124
COLOUR_TEXT_REGION 112 834 124 834 51
STRAND 127 834 132
COLOUR_TEXT_REGION 127 834 132 834 51
HELIX 23 834 34
COLOUR_TEXT_REGION 23 834 34 834 50
STRAND 3 839 9
COLOUR_TEXT_REGION 3 839 9 839 51
STRAND 13 839 18
COLOUR_TEXT_REGION 13 839 18 839 51
STRAND 39 839 47
COLOUR_TEXT_REGION 39 839 47 839 51
STRAND 50 839 56
COLOUR_TEXT_REGION 50 839 56 839 51
STRAND 63 839 64
COLOUR_TEXT_REGION 63 839 64 839 51
STRAND 71 839 81
COLOUR_TEXT_REGION 71 839 81 839 51
STRAND 87 839 96
COLOUR_TEXT_REGION 87 839 96 839 51
STRAND 101 839 107
COLOUR_TEXT_REGION 101 839 107 839 51
STRAND 112 839 124
COLOUR_TEXT_REGION 112 839 124 839 51
STRAND 127 839 132
COLOUR_TEXT_REGION 127 839 132 839 51
HELIX 23 839 34
COLOUR_TEXT_REGION 23 839 34 839 50
STRAND 4 840 9
COLOUR_TEXT_REGION 4 840 9 840 51
STRAND 13 840 18
COLOUR_TEXT_REGION 13 840 18 840 51
STRAND 39 840 47
COLOUR_TEXT_REGION 39 840 47 840 51
STRAND 52 840 55
COLOUR_TEXT_REGION 52 840 55 840 51
STRAND 63 840 65
COLOUR_TEXT_REGION 63 840 65 840 51
STRAND 72 840 81
COLOUR_TEXT_REGION 72 840 81 840 51
STRAND 88 840 96
COLOUR_TEXT_REGION 88 840 96 840 51
STRAND 101 840 106
COLOUR_TEXT_REGION 101 840 106 840 51
STRAND 112 840 124
COLOUR_TEXT_REGION 112 840 124 840 51
STRAND 127 840 132
COLOUR_TEXT_REGION 127 840 132 840 51
HELIX 23 840 34
COLOUR_TEXT_REGION 23 840 34 840 50