SILENT_MODE BLOCK_FILE jp_ow1si13.concise.blc MAX_NSEQ 310 MAX_INPUT_LEN 312 OUTPUT_FILE jp_ow1si13.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 243 299 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 300 243 309 H SPACE SUB_CHARS 1 300 243 309 E SPACE SUB_CHARS 1 300 243 309 - SPACE STRAND 33 303 35 COLOUR_TEXT_REGION 33 303 35 303 51 STRAND 43 303 46 COLOUR_TEXT_REGION 43 303 46 303 51 STRAND 53 303 60 COLOUR_TEXT_REGION 53 303 60 303 51 STRAND 67 303 73 COLOUR_TEXT_REGION 67 303 73 303 51 STRAND 81 303 87 COLOUR_TEXT_REGION 81 303 87 303 51 STRAND 96 303 103 COLOUR_TEXT_REGION 96 303 103 303 51 STRAND 108 303 114 COLOUR_TEXT_REGION 108 303 114 303 51 STRAND 157 303 161 COLOUR_TEXT_REGION 157 303 161 303 51 HELIX 13 303 27 COLOUR_TEXT_REGION 13 303 27 303 50 HELIX 126 303 135 COLOUR_TEXT_REGION 126 303 135 303 50 HELIX 165 303 188 COLOUR_TEXT_REGION 165 303 188 303 50 HELIX 195 303 213 COLOUR_TEXT_REGION 195 303 213 303 50 HELIX 218 303 222 COLOUR_TEXT_REGION 218 303 222 303 50 HELIX 227 303 237 COLOUR_TEXT_REGION 227 303 237 303 50 STRAND 33 308 34 COLOUR_TEXT_REGION 33 308 34 308 51 STRAND 43 308 45 COLOUR_TEXT_REGION 43 308 45 308 51 STRAND 53 308 60 COLOUR_TEXT_REGION 53 308 60 308 51 STRAND 67 308 72 COLOUR_TEXT_REGION 67 308 72 308 51 STRAND 81 308 87 COLOUR_TEXT_REGION 81 308 87 308 51 STRAND 96 308 103 COLOUR_TEXT_REGION 96 308 103 308 51 STRAND 108 308 114 COLOUR_TEXT_REGION 108 308 114 308 51 STRAND 157 308 161 COLOUR_TEXT_REGION 157 308 161 308 51 HELIX 12 308 27 COLOUR_TEXT_REGION 12 308 27 308 50 HELIX 126 308 135 COLOUR_TEXT_REGION 126 308 135 308 50 HELIX 166 308 187 COLOUR_TEXT_REGION 166 308 187 308 50 HELIX 195 308 213 COLOUR_TEXT_REGION 195 308 213 308 50 HELIX 218 308 219 COLOUR_TEXT_REGION 218 308 219 308 50 HELIX 227 308 237 COLOUR_TEXT_REGION 227 308 237 308 50 STRAND 33 309 36 COLOUR_TEXT_REGION 33 309 36 309 51 STRAND 43 309 47 COLOUR_TEXT_REGION 43 309 47 309 51 STRAND 53 309 60 COLOUR_TEXT_REGION 53 309 60 309 51 STRAND 66 309 74 COLOUR_TEXT_REGION 66 309 74 309 51 STRAND 80 309 87 COLOUR_TEXT_REGION 80 309 87 309 51 STRAND 97 309 103 COLOUR_TEXT_REGION 97 309 103 309 51 STRAND 108 309 114 COLOUR_TEXT_REGION 108 309 114 309 51 STRAND 156 309 161 COLOUR_TEXT_REGION 156 309 161 309 51 HELIX 14 309 28 COLOUR_TEXT_REGION 14 309 28 309 50 HELIX 125 309 134 COLOUR_TEXT_REGION 125 309 134 309 50 HELIX 165 309 188 COLOUR_TEXT_REGION 165 309 188 309 50 HELIX 194 309 212 COLOUR_TEXT_REGION 194 309 212 309 50 HELIX 218 309 223 COLOUR_TEXT_REGION 218 309 223 309 50 HELIX 227 309 237 COLOUR_TEXT_REGION 227 309 237 309 50