SILENT_MODE
BLOCK_FILE jp_lLQKAd6.concise.blc
MAX_NSEQ 197
MAX_INPUT_LEN 199
OUTPUT_FILE jp_lLQKAd6.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 94 186   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 187 94 196 H SPACE
SUB_CHARS 1 187 94 196 E SPACE
SUB_CHARS 1 187 94 196 - SPACE
STRAND 15 190 19
COLOUR_TEXT_REGION 15 190 19 190 51
STRAND 30 190 36
COLOUR_TEXT_REGION 30 190 36 190 51
STRAND 41 190 48
COLOUR_TEXT_REGION 41 190 48 190 51
STRAND 56 190 60
COLOUR_TEXT_REGION 56 190 60 190 51
STRAND 74 190 77
COLOUR_TEXT_REGION 74 190 77 190 51
STRAND 81 190 83
COLOUR_TEXT_REGION 81 190 83 190 51
HELIX 6 190 12
COLOUR_TEXT_REGION 6 190 12 190 50
HELIX 61 190 69
COLOUR_TEXT_REGION 61 190 69 190 50
HELIX 85 190 92
COLOUR_TEXT_REGION 85 190 92 190 50
STRAND 15 195 18
COLOUR_TEXT_REGION 15 195 18 195 51
STRAND 30 195 36
COLOUR_TEXT_REGION 30 195 36 195 51
STRAND 42 195 48
COLOUR_TEXT_REGION 42 195 48 195 51
STRAND 56 195 60
COLOUR_TEXT_REGION 56 195 60 195 51
STRAND 74 195 77
COLOUR_TEXT_REGION 74 195 77 195 51
STRAND 82 195 83
COLOUR_TEXT_REGION 82 195 83 195 51
HELIX 7 195 12
COLOUR_TEXT_REGION 7 195 12 195 50
HELIX 61 195 69
COLOUR_TEXT_REGION 61 195 69 195 50
HELIX 85 195 92
COLOUR_TEXT_REGION 85 195 92 195 50
STRAND 15 196 19
COLOUR_TEXT_REGION 15 196 19 196 51
STRAND 30 196 36
COLOUR_TEXT_REGION 30 196 36 196 51
STRAND 41 196 49
COLOUR_TEXT_REGION 41 196 49 196 51
STRAND 57 196 60
COLOUR_TEXT_REGION 57 196 60 196 51
STRAND 73 196 77
COLOUR_TEXT_REGION 73 196 77 196 51
STRAND 80 196 84
COLOUR_TEXT_REGION 80 196 84 196 51
HELIX 6 196 12
COLOUR_TEXT_REGION 6 196 12 196 50
HELIX 61 196 69
COLOUR_TEXT_REGION 61 196 69 196 50
HELIX 85 196 92
COLOUR_TEXT_REGION 85 196 92 196 50