SILENT_MODE BLOCK_FILE jp_sYjuV1P.concise.blc MAX_NSEQ 554 MAX_INPUT_LEN 556 OUTPUT_FILE jp_sYjuV1P.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 265 543 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 544 265 553 H SPACE SUB_CHARS 1 544 265 553 E SPACE SUB_CHARS 1 544 265 553 - SPACE STRAND 32 547 37 COLOUR_TEXT_REGION 32 547 37 547 51 STRAND 66 547 70 COLOUR_TEXT_REGION 66 547 70 547 51 STRAND 125 547 126 COLOUR_TEXT_REGION 125 547 126 547 51 STRAND 132 547 137 COLOUR_TEXT_REGION 132 547 137 547 51 STRAND 169 547 174 COLOUR_TEXT_REGION 169 547 174 547 51 STRAND 196 547 204 COLOUR_TEXT_REGION 196 547 204 547 51 STRAND 209 547 215 COLOUR_TEXT_REGION 209 547 215 547 51 STRAND 237 547 241 COLOUR_TEXT_REGION 237 547 241 547 51 STRAND 245 547 249 COLOUR_TEXT_REGION 245 547 249 547 51 HELIX 2 547 7 COLOUR_TEXT_REGION 2 547 7 547 50 HELIX 15 547 24 COLOUR_TEXT_REGION 15 547 24 547 50 HELIX 49 547 60 COLOUR_TEXT_REGION 49 547 60 547 50 HELIX 88 547 95 COLOUR_TEXT_REGION 88 547 95 547 50 HELIX 111 547 120 COLOUR_TEXT_REGION 111 547 120 547 50 HELIX 141 547 145 COLOUR_TEXT_REGION 141 547 145 547 50 HELIX 159 547 165 COLOUR_TEXT_REGION 159 547 165 547 50 HELIX 182 547 189 COLOUR_TEXT_REGION 182 547 189 547 50 HELIX 223 547 232 COLOUR_TEXT_REGION 223 547 232 547 50 HELIX 252 547 263 COLOUR_TEXT_REGION 252 547 263 547 50 STRAND 32 552 37 COLOUR_TEXT_REGION 32 552 37 552 51 STRAND 66 552 69 COLOUR_TEXT_REGION 66 552 69 552 51 STRAND 125 552 126 COLOUR_TEXT_REGION 125 552 126 552 51 STRAND 132 552 137 COLOUR_TEXT_REGION 132 552 137 552 51 STRAND 169 552 173 COLOUR_TEXT_REGION 169 552 173 552 51 STRAND 196 552 203 COLOUR_TEXT_REGION 196 552 203 552 51 STRAND 208 552 215 COLOUR_TEXT_REGION 208 552 215 552 51 STRAND 237 552 240 COLOUR_TEXT_REGION 237 552 240 552 51 STRAND 245 552 249 COLOUR_TEXT_REGION 245 552 249 552 51 HELIX 2 552 7 COLOUR_TEXT_REGION 2 552 7 552 50 HELIX 15 552 24 COLOUR_TEXT_REGION 15 552 24 552 50 HELIX 49 552 60 COLOUR_TEXT_REGION 49 552 60 552 50 HELIX 88 552 95 COLOUR_TEXT_REGION 88 552 95 552 50 HELIX 111 552 120 COLOUR_TEXT_REGION 111 552 120 552 50 HELIX 141 552 145 COLOUR_TEXT_REGION 141 552 145 552 50 HELIX 159 552 165 COLOUR_TEXT_REGION 159 552 165 552 50 HELIX 182 552 189 COLOUR_TEXT_REGION 182 552 189 552 50 HELIX 223 552 232 COLOUR_TEXT_REGION 223 552 232 552 50 HELIX 252 552 263 COLOUR_TEXT_REGION 252 552 263 552 50 STRAND 32 553 37 COLOUR_TEXT_REGION 32 553 37 553 51 STRAND 65 553 70 COLOUR_TEXT_REGION 65 553 70 553 51 STRAND 125 553 127 COLOUR_TEXT_REGION 125 553 127 553 51 STRAND 132 553 136 COLOUR_TEXT_REGION 132 553 136 553 51 STRAND 169 553 174 COLOUR_TEXT_REGION 169 553 174 553 51 STRAND 182 553 183 COLOUR_TEXT_REGION 182 553 183 553 51 STRAND 198 553 204 COLOUR_TEXT_REGION 198 553 204 553 51 STRAND 209 553 215 COLOUR_TEXT_REGION 209 553 215 553 51 STRAND 237 553 241 COLOUR_TEXT_REGION 237 553 241 553 51 STRAND 245 553 250 COLOUR_TEXT_REGION 245 553 250 553 51 HELIX 2 553 7 COLOUR_TEXT_REGION 2 553 7 553 50 HELIX 15 553 24 COLOUR_TEXT_REGION 15 553 24 553 50 HELIX 49 553 60 COLOUR_TEXT_REGION 49 553 60 553 50 HELIX 88 553 94 COLOUR_TEXT_REGION 88 553 94 553 50 HELIX 113 553 120 COLOUR_TEXT_REGION 113 553 120 553 50 HELIX 141 553 145 COLOUR_TEXT_REGION 141 553 145 553 50 HELIX 159 553 165 COLOUR_TEXT_REGION 159 553 165 553 50 HELIX 184 553 190 COLOUR_TEXT_REGION 184 553 190 553 50 HELIX 224 553 232 COLOUR_TEXT_REGION 224 553 232 553 50 HELIX 251 553 263 COLOUR_TEXT_REGION 251 553 263 553 50