SILENT_MODE
BLOCK_FILE jp_K4Iu0q6.concise.blc
MAX_NSEQ 942
MAX_INPUT_LEN 944
OUTPUT_FILE jp_K4Iu0q6.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 158 931   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 932 158 941 H SPACE
SUB_CHARS 1 932 158 941 E SPACE
SUB_CHARS 1 932 158 941 - SPACE
STRAND 2 935 7
COLOUR_TEXT_REGION 2 935 7 935 51
STRAND 33 935 36
COLOUR_TEXT_REGION 33 935 36 935 51
STRAND 40 935 41
COLOUR_TEXT_REGION 40 935 41 935 51
STRAND 54 935 61
COLOUR_TEXT_REGION 54 935 61 935 51
STRAND 95 935 97
COLOUR_TEXT_REGION 95 935 97 935 51
STRAND 112 935 112
COLOUR_TEXT_REGION 112 935 112 935 51
HELIX 13 935 27
COLOUR_TEXT_REGION 13 935 27 935 50
HELIX 66 935 80
COLOUR_TEXT_REGION 66 935 80 935 50
HELIX 98 935 99
COLOUR_TEXT_REGION 98 935 99 935 50
HELIX 118 935 119
COLOUR_TEXT_REGION 118 935 119 935 50
HELIX 122 935 131
COLOUR_TEXT_REGION 122 935 131 935 50
HELIX 142 935 150
COLOUR_TEXT_REGION 142 935 150 935 50
STRAND 2 940 7
COLOUR_TEXT_REGION 2 940 7 940 51
STRAND 33 940 36
COLOUR_TEXT_REGION 33 940 36 940 51
STRAND 40 940 41
COLOUR_TEXT_REGION 40 940 41 940 51
STRAND 54 940 62
COLOUR_TEXT_REGION 54 940 62 940 51
STRAND 95 940 98
COLOUR_TEXT_REGION 95 940 98 940 51
STRAND 112 940 113
COLOUR_TEXT_REGION 112 940 113 940 51
HELIX 14 940 27
COLOUR_TEXT_REGION 14 940 27 940 50
HELIX 66 940 79
COLOUR_TEXT_REGION 66 940 79 940 50
HELIX 118 940 119
COLOUR_TEXT_REGION 118 940 119 940 50
HELIX 124 940 131
COLOUR_TEXT_REGION 124 940 131 940 50
HELIX 142 940 149
COLOUR_TEXT_REGION 142 940 149 940 50
STRAND 2 941 7
COLOUR_TEXT_REGION 2 941 7 941 51
STRAND 32 941 36
COLOUR_TEXT_REGION 32 941 36 941 51
STRAND 54 941 60
COLOUR_TEXT_REGION 54 941 60 941 51
STRAND 92 941 97
COLOUR_TEXT_REGION 92 941 97 941 51
STRAND 112 941 112
COLOUR_TEXT_REGION 112 941 112 941 51
HELIX 13 941 27
COLOUR_TEXT_REGION 13 941 27 941 50
HELIX 65 941 80
COLOUR_TEXT_REGION 65 941 80 941 50
HELIX 99 941 100
COLOUR_TEXT_REGION 99 941 100 941 50
HELIX 121 941 130
COLOUR_TEXT_REGION 121 941 130 941 50
HELIX 141 941 151
COLOUR_TEXT_REGION 141 941 151 941 50