SILENT_MODE
BLOCK_FILE jp_joKw_6t.concise.blc
MAX_NSEQ 899
MAX_INPUT_LEN 901
OUTPUT_FILE jp_joKw_6t.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 140 888   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 889 140 898 H SPACE
SUB_CHARS 1 889 140 898 E SPACE
SUB_CHARS 1 889 140 898 - SPACE
STRAND 5 892 13
COLOUR_TEXT_REGION 5 892 13 892 51
STRAND 26 892 28
COLOUR_TEXT_REGION 26 892 28 892 51
STRAND 32 892 34
COLOUR_TEXT_REGION 32 892 34 892 51
STRAND 40 892 48
COLOUR_TEXT_REGION 40 892 48 892 51
STRAND 59 892 66
COLOUR_TEXT_REGION 59 892 66 892 51
STRAND 73 892 82
COLOUR_TEXT_REGION 73 892 82 892 51
STRAND 91 892 93
COLOUR_TEXT_REGION 91 892 93 892 51
STRAND 129 892 139
COLOUR_TEXT_REGION 129 892 139 892 51
STRAND 5 897 13
COLOUR_TEXT_REGION 5 897 13 897 51
STRAND 26 897 28
COLOUR_TEXT_REGION 26 897 28 897 51
STRAND 32 897 34
COLOUR_TEXT_REGION 32 897 34 897 51
STRAND 40 897 47
COLOUR_TEXT_REGION 40 897 47 897 51
STRAND 58 897 65
COLOUR_TEXT_REGION 58 897 65 897 51
STRAND 73 897 83
COLOUR_TEXT_REGION 73 897 83 897 51
STRAND 91 897 93
COLOUR_TEXT_REGION 91 897 93 897 51
STRAND 129 897 138
COLOUR_TEXT_REGION 129 897 138 897 51
STRAND 4 898 13
COLOUR_TEXT_REGION 4 898 13 898 51
STRAND 26 898 28
COLOUR_TEXT_REGION 26 898 28 898 51
STRAND 32 898 34
COLOUR_TEXT_REGION 32 898 34 898 51
STRAND 41 898 48
COLOUR_TEXT_REGION 41 898 48 898 51
STRAND 60 898 66
COLOUR_TEXT_REGION 60 898 66 898 51
STRAND 75 898 81
COLOUR_TEXT_REGION 75 898 81 898 51
STRAND 90 898 93
COLOUR_TEXT_REGION 90 898 93 898 51
STRAND 129 898 139
COLOUR_TEXT_REGION 129 898 139 898 51
HELIX 114 898 116
COLOUR_TEXT_REGION 114 898 116 898 50