SILENT_MODE BLOCK_FILE jp_EMFxfx4.concise.blc MAX_NSEQ 895 MAX_INPUT_LEN 897 OUTPUT_FILE jp_EMFxfx4.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 143 884 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 885 143 894 H SPACE SUB_CHARS 1 885 143 894 E SPACE SUB_CHARS 1 885 143 894 - SPACE STRAND 4 888 5 COLOUR_TEXT_REGION 4 888 5 888 51 STRAND 13 888 25 COLOUR_TEXT_REGION 13 888 25 888 51 STRAND 68 888 77 COLOUR_TEXT_REGION 68 888 77 888 51 STRAND 82 888 93 COLOUR_TEXT_REGION 82 888 93 888 51 STRAND 123 888 125 COLOUR_TEXT_REGION 123 888 125 888 51 STRAND 128 888 133 COLOUR_TEXT_REGION 128 888 133 888 51 HELIX 27 888 34 COLOUR_TEXT_REGION 27 888 34 888 50 HELIX 40 888 54 COLOUR_TEXT_REGION 40 888 54 888 50 HELIX 99 888 116 COLOUR_TEXT_REGION 99 888 116 888 50 STRAND 4 893 5 COLOUR_TEXT_REGION 4 893 5 893 51 STRAND 13 893 25 COLOUR_TEXT_REGION 13 893 25 893 51 STRAND 70 893 77 COLOUR_TEXT_REGION 70 893 77 893 51 STRAND 82 893 92 COLOUR_TEXT_REGION 82 893 92 893 51 STRAND 124 893 125 COLOUR_TEXT_REGION 124 893 125 893 51 STRAND 128 893 133 COLOUR_TEXT_REGION 128 893 133 893 51 HELIX 27 893 34 COLOUR_TEXT_REGION 27 893 34 893 50 HELIX 40 893 53 COLOUR_TEXT_REGION 40 893 53 893 50 HELIX 99 893 114 COLOUR_TEXT_REGION 99 893 114 893 50 STRAND 4 894 6 COLOUR_TEXT_REGION 4 894 6 894 51 STRAND 13 894 25 COLOUR_TEXT_REGION 13 894 25 894 51 STRAND 41 894 44 COLOUR_TEXT_REGION 41 894 44 894 51 STRAND 68 894 76 COLOUR_TEXT_REGION 68 894 76 894 51 STRAND 83 894 93 COLOUR_TEXT_REGION 83 894 93 894 51 STRAND 123 894 126 COLOUR_TEXT_REGION 123 894 126 894 51 STRAND 128 894 133 COLOUR_TEXT_REGION 128 894 133 894 51 HELIX 27 894 34 COLOUR_TEXT_REGION 27 894 34 894 50 HELIX 45 894 55 COLOUR_TEXT_REGION 45 894 55 894 50 HELIX 58 894 62 COLOUR_TEXT_REGION 58 894 62 894 50 HELIX 100 894 117 COLOUR_TEXT_REGION 100 894 117 894 50