Jpred secondary structure prediction results

QUERY           : VPRGSAKGDGVTDDTAALTSALNDTPVGQKINGNGKTYKVTSLPDISRFINTRFVYERIPGQPLYYASEEFVQGELFKITDTPYYNAWPQDKAFVYENVIYAPYMGSDRHGVSRLHVSWVKSGDDGQTWSTPEWLTDLHPDYPTVNYHCMSMGVCRNRLFAMIETRTLAKNALTNCALWDRPMSRSLHLTGGITKAANQRYATIHVPDHGLFVGDFVNFSNSAVTGVSGDMTVATVIDKDNFTVLTPNQQTSDLNNAGKNWHMGTSFHKSPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSEYEPDASEPCIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRFPHNVHHTTLPFAKVGDDLIMFGSERAENEWEAGAPDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGEDHFNPWTYGDNSAKDPFKSDGHPSDLYCYKMKIGPDNRV : QUERY 
UniRef90_K7QLS1 : -PRGWAVGDGATDDTNAITQLLAAMPDGWIVDGRNLTFKVTTLPDISKFKNAAFVYERIVGQPLTYVSEGFFDGNLTKITDTPFYNAWTQDKTFVYDNVIYAPFMAGERHGVQNLHVAWVKSGDDGQTWSMPEWLTPIHPDYNAVNYHCMSMGVCGNRLYAVIETRYLSNMRLKKAELWSRPMPYYRRPTGGITISSGSTTATIVLEKHGLKVGDAVNFSNSGATGVSGNMTVASVINKDTFTVTLASAATSNIDNTGTTWHFGTRFWDSPWEITELPDVACVTETHSFTVIDNYTFAVGYHNGDVSPRRLGILYFNNAYSDPSSFTRRTISQEYADNAAEPCIKYYDGILYLTTRGTSTSAAGSTLAMSTDLGENWNYLRFPNNVHHTNLPFAKVGNYLYIFGTERSFGEWEGEELDNRYKGTYPRTFMCKINVSSWSLSDVQWFNITDQMYQGHIVNSACGVGSVCVKDGWLYYIFGGEDFLSPWSIGDNSKKLWYKHDGHPADLYSYRLKITEHDFV : UniRef90_K7QLS1
UniRef90_T9VT42 : --------------------------------------------------------------------------------------------MFVYDNVIYAPFMAGDRHGVNNLHVAWVRSGDDGKTWTTPEWLTDLHENYPTVNYHCMSMGVVRNRLFAVIETRTVRGNKLQVAELWDRPMSRSLRVYGGITKAANQQVAYIRITDHGLFAGDFVNFSNSGVTDVTGNMTVTTVIDKNTFTVTTQNTQDVDQNNEGRYWSFGTSFHSSPWRKTSLGTIPSVTEIHSFATISDNSFAVGYHNGDIGPRELGILYFSDAFGSPGSFVRRRIPAEYEANASEPCVKYYDGILYLTTRGTLSTQPGSSLHRSSDLGTSWNSLRFPNNVHHSNLPFAKVGDELVIFGSERAFGEWEGGEPDNRYAGNYPRTFMTRVNVNEWSLDNVEWVNVTDQIYQGGIVNSAVGVGSVCIKDNWLYYIFGGEDFLNPWSIGDNNRKYPYVHDGHPADLYCFRVKIKQEEFV : UniRef90_T9VT42
UniRef90_S5F8T3 : --------DSVNND--AINRLQA---WQEPVLGLGNVIPASRIVPASHISQVAYRFNGID-----YLSEDYYKADLSQITRTGYYTAWTQDKAFVHNGVIYAPFMLAFRHGYDDLRIAWVKSFDNGNTWTTPEILMDYHPQNPTLGWHCFSMGIVGNRLFMLVEERDVASKKMVRSFLYSRVMTKNFFVTGGISQSGN--VVTVELEEHGLFVGDSISFSNSGISGVSGKMTVTSVLDANRFTVMNSKEQTITNNDS---WLCATYFEDNQWQIQELSTFAAATHLHSFCPVNRSQFAFGFHNGDASPREIGFVKCSINWATGRVTTDKIILSELSRAAAEPCLRYYKNKLFLTTRSQ-NPNVGSLLIRCDLNGENISSFNISEKIHYTNMPFHIENDVIYMFAAERAENEWETGQSDNRYRANRPRMFLLKHRLSDWGKPEKTEVQVISQIYSGEAANSACGVGSVVYKDGVLYCLFGDEDYRNSHSLTENARNNAHIDSGYQPEIYALRIVL------ : UniRef90_S5F8T3
UniRef90_T8MFU4 : --RGWAIGDGVHDDTSALSELLSVATGGEKIDGRGLTFKVSTLPDVSRFKNARFLFERIPGQPLFYVSEDFIQGELFKITDTPWYNAWTQDKTFVYDNVIYAPFMAGDRHGVNNLHVAWVRSGDDGKTWTTPEWLTDLHENYPTVNYHCMSMGVVRNRLFAVIETRTVSGNKLQVAELWDRPMSRSLRVYGGITKAANQQVAYIRITDHGLFAGDFVNFSNSGVTGVTGNMTVTTVIDKNTFTVTTQNTQDVDQNNEGRYWSFGTSFHSSPWRKTSLGTIPSVTEIHSFATISDNSFAVGYHNGDIGPRELGILYFSDAFGSPGSFVRRRIPAEYEANASEPCVKYYDGILYLTTRGTLSTQPGSSLHRSSDLGT------------------------------------------------------------------------------------------------------------------------------------------------- : UniRef90_T8MFU4
UniRef90_D0D2Z1 : ------------------------------VDGQGQTIPVTRIPEGNRYRNVFWEVENFEGGTARVAARDTIKVNTVLVTRSELYESWPQDKCFLFEQVLFLPWVKGSGHGNRDMSTSLIR-GTPKRLGPDIEHLFQRIDEGAGTGGSTWSAGEVDGQML-MIEREKDVEGTIRDHHLWGRRLHEA-RLDQQLEVSAEPGDGTVRLTTHGLKPGDRFGVSGVGGTAISGEYVVKSVVDAHSVVVAADDITGSDSATLAPTRLVGPKSLSEALRDFDGSAWPTVTEMHSFGRVPGSSFWFGLHGGKGNAKGVWIVRVDNLFAGATISGAVQIGEQ----GVEPTIWHVDGRVFGAIRSQSETAYGVTLHKCVMSGDAWNG-KLVGVVNGTRTPAGAVG--LYAFVWE-SFEAFEAGGFDS--AESY------YIGSDNWAAD--TFVNSD---------TSAVGVGSMVVQENGVLCIAGAQE--NPGTTYD----------------------------- : UniRef90_D0D2Z1
UniRef90_U3QWG8 : ------VGNGVADDTAAKASAVGDVD---IYNGKGRTFAVSALPDLSRFSHAAFKRGSI-----RHITEDFLRQNTSKITFGREYTNWPQDKAYVLNNQIRVWVNCGDSHLDGDLRPAVVVSDDGGSSWESPELLDE-----NLFGYTTWCAGTDGTYEYVIVRKDVDSS-----HSLYKRTVP----------------------------------------SGTAGDYYAAWTVTPITFPV--------------PVW---------------GSGQPVMVH--SFTVGHGGSIVVGFHYGTGA----GLYRSTDQGATWTAYTIQQ-----SSDAEEPSVKWASGNYYGFLR--SGDAINPQFWVSTDNLATFSFYRAPQPLGDSPVPLQIVNGVVHAFCSYRS-GTLEGAGSDGPTSAFYIR--------------------------------------------------------------------------------------------- : UniRef90_U3QWG8

                : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161-------171-------181-------191-------201-------211-------221-------231-------241-------251-------261-------271-------281-------291-------301-------311-------321-------331-------341-------351-------361-------371-------381-------391-------401-------411-------421-------431-------441-------451-------461-------471-------481-------491-------501-------511------- :
OrigSeq         : VPRGSAKGDGVTDDTAALTSALNDTPVGQKINGNGKTYKVTSLPDISRFINTRFVYERIPGQPLYYASEEFVQGELFKITDTPYYNAWPQDKAFVYENVIYAPYMGSDRHGVSRLHVSWVKSGDDGQTWSTPEWLTDLHPDYPTVNYHCMSMGVCRNRLFAMIETRTLAKNALTNCALWDRPMSRSLHLTGGITKAANQRYATIHVPDHGLFVGDFVNFSNSAVTGVSGDMTVATVIDKDNFTVLTPNQQTSDLNNAGKNWHMGTSFHKSPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSEYEPDASEPCIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRFPHNVHHTTLPFAKVGDDLIMFGSERAENEWEAGAPDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGEDHFNPWTYGDNSAKDPFKSDGHPSDLYCYKMKIGPDNRV : OrigSeq

Jnet            : -------------HHHHHHHHHH------E------EEEEE---------EEEEEEE------EEEE---HH---EEE-------------EEEE---EEEEEEE----------EEEEEEE----------HHHH-----------EEEEEEE---EEEEEEEEE------EEEEE---------E-----EEE-----EEEEEEE--------EEE--------EEEEEEEEEEE---EEEEE--------------EEEE-----------------EEEEEEE--EEE---EEEEEEE-------EEEEEEEE-------EEEEEEEHHH--------EEEEE--EEEEEEE---------EEEEEE---------------------------EEEEEEEEHHHH---------------HHHHHEEEE---------EEEEE---EE----------EEEEEE---EEEEEEE----------------------------EEEEEEEE----- : Jnet
jhmm            : -------------HHHHHHHHHH-------------EEEEE---------EEEEEEE------EEEHHHHHHHH-EEE-------------HHHE---EEEEEEE-----------EEEEEE----------HHHHH----------EEEEEEEE--EEEEEEEEE------HHHH----------EE-----E------EEEEEEE--------EEE---------EEEEEEEEEE----EEEE--------------EEEE-----------------EEEEEEE---EE---EEEEEEE-------EEEEEEEE-------EEEEEEHHHHHH------EEEEE--EEEEEEE---------EEEEEEE-------EE------------EE---EEEEEEEEHHHHH--------------HHHHHHEEE---------EEEEEE--EE---EE-----EEEEEE---EEEEEEE----------------------------EEEEEEEE----- : jhmm
jpssm           : -------------HHHHHHHHHH------EEE----EEEEE-------EEEEEEEE-------EEEE--------EEEE------------EEEE---EEEEEEEE--------EEEEEEEE------------H------------EEEEEE----EEEEEEEEE------EEEEEE--------------EEEE----EEEEEEE--------EEE-----EEEEE-EEEEEEEE---EEEEE--------------EEEE------------------EEE---EEEE----EEEEEEE-------EEEEEEEE--------EEEEEE-----------EEEEE--EEEEEE----------HHHHHHH--------------------------EEEEEEEEHH------------------HHHEEEEE---------EEEEE---------------EEEEEE---EEEEEE----------------------------EEEEEEEE------ : jpssm

Lupas 14        : ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21        : ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28        : ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25         : -------B-BB--B--BBB-BBB-B-----B-B---BB-BBBBB----B--BBB-B--B----B-BBB-BBB---B--BB-B--B--BBBBBBBBB--BBBBBBBBB--BB---BBBBBBBB------B--B-BBB-BB--B--BBBBBBBBB-B-BBBBBBBB----B---B--B-BB-B-B---B-B---B--------BBB-B--BBBBBBB-BBBBBBBBBBBBB-BBBBBBB----BBBBB-----B-----B-BBBBBB-B----B----B--BBBBBBBBBBB-B---BBBBBBB-B--BB-BBBBBBB-B-B----BBB---B---B---BB-BBBBBB---BBBBBBB------BBBBB-B---B-BB-BB-BB--B--B-BBBBBB--BBBBBBBBBB---B--------B---BBBBBBB-B-B--B----B-BB-BB--BB-B-BBBBBBBBBBBBB--BBBBBBBBB--B--BBBB-------BB----B---BBBBBB-B------ : Jnet_25
Jnet_5          : --------------------BB-----------------B-----------B--------------BB----------B-------------B-B----B-BBB--B-------B--BBB-----------B--B-----------B-BBBBB-----BBBBB-------------------B---------B--------B-B-B---B---B-----------------BB--B-----B-B----------------B-BB----------------B-BB-BB--B-B----BBBBB---------BBBB-B----------B---B-----------BB------B-BBB-----------B--B-----------B---------BB------BBBBB---B--------------------B-B-----------------------------BB-BBBBB-----BBBBB----------------------------BBBB-B-------- : Jnet_5
Jnet_0          : --------------------------------------------------------------------------------------------------------------------------------------B-------------B------------B-----------------------------------------B----------------------------B----------------------------------------------------------------BBB-------------B----------------------------BB--------B-------------B------------------------------------B-----------------------------------------------------------B------------B-B----------------------------------------- : Jnet_0
Jnet Rel        : 8988888877652688888877517877411347745888605777753123577527787725752000001340551467766677763244648648999861477777753188888536777766530100267777777734788711286378888863346774024411367776541167732830488558998615777754156536761212001078998855851898536777666777763246436777766521467777115541011261786078988537886315888886157778770477751011037778761788542689985077777765023443200467777227777777766411124326777521112037667665410145500221134157777777457874154003550024551589987076589985067777667777777777777777777507888886178899 : Jnet Rel


Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.