SILENT_MODE
BLOCK_FILE jp_JWEO8E2.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_JWEO8E2.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 150 30   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 31 150 40 H SPACE
SUB_CHARS 1 31 150 40 E SPACE
SUB_CHARS 1 31 150 40 - SPACE
STRAND 5 34 6
COLOUR_TEXT_REGION 5 34 6 34 51
STRAND 13 34 18
COLOUR_TEXT_REGION 13 34 18 34 51
STRAND 24 34 26
COLOUR_TEXT_REGION 24 34 26 34 51
STRAND 30 34 32
COLOUR_TEXT_REGION 30 34 32 34 51
STRAND 37 34 44
COLOUR_TEXT_REGION 37 34 44 34 51
STRAND 56 34 56
COLOUR_TEXT_REGION 56 34 56 34 51
STRAND 62 34 65
COLOUR_TEXT_REGION 62 34 65 34 51
STRAND 77 34 81
COLOUR_TEXT_REGION 77 34 81 34 51
STRAND 93 34 98
COLOUR_TEXT_REGION 93 34 98 34 51
STRAND 105 34 110
COLOUR_TEXT_REGION 105 34 110 34 51
STRAND 121 34 124
COLOUR_TEXT_REGION 121 34 124 34 51
STRAND 138 34 143
COLOUR_TEXT_REGION 138 34 143 34 51
HELIX 50 34 55
COLOUR_TEXT_REGION 50 34 55 34 50
STRAND 5 39 6
COLOUR_TEXT_REGION 5 39 6 39 51
STRAND 13 39 18
COLOUR_TEXT_REGION 13 39 18 39 51
STRAND 24 39 24
COLOUR_TEXT_REGION 24 39 24 39 51
STRAND 30 39 32
COLOUR_TEXT_REGION 30 39 32 39 51
STRAND 37 39 43
COLOUR_TEXT_REGION 37 39 43 39 51
STRAND 51 39 56
COLOUR_TEXT_REGION 51 39 56 39 51
STRAND 62 39 64
COLOUR_TEXT_REGION 62 39 64 39 51
STRAND 78 39 81
COLOUR_TEXT_REGION 78 39 81 39 51
STRAND 94 39 98
COLOUR_TEXT_REGION 94 39 98 39 51
STRAND 105 39 109
COLOUR_TEXT_REGION 105 39 109 39 51
STRAND 115 39 117
COLOUR_TEXT_REGION 115 39 117 39 51
STRAND 121 39 122
COLOUR_TEXT_REGION 121 39 122 39 51
STRAND 140 39 143
COLOUR_TEXT_REGION 140 39 143 39 51
STRAND 5 40 6
COLOUR_TEXT_REGION 5 40 6 40 51
STRAND 13 40 18
COLOUR_TEXT_REGION 13 40 18 40 51
STRAND 24 40 32
COLOUR_TEXT_REGION 24 40 32 40 51
STRAND 36 40 44
COLOUR_TEXT_REGION 36 40 44 40 51
STRAND 64 40 65
COLOUR_TEXT_REGION 64 40 65 40 51
STRAND 77 40 82
COLOUR_TEXT_REGION 77 40 82 40 51
STRAND 93 40 97
COLOUR_TEXT_REGION 93 40 97 40 51
STRAND 106 40 110
COLOUR_TEXT_REGION 106 40 110 40 51
STRAND 121 40 125
COLOUR_TEXT_REGION 121 40 125 40 51
STRAND 138 40 142
COLOUR_TEXT_REGION 138 40 142 40 51
HELIX 47 40 56
COLOUR_TEXT_REGION 47 40 56 40 50