QUERY : SRDFRYGAVPNRAVPVFFDTNGVRTVPAPMEFTGDLGLGHVTIRASTSSNIRSEVLMEGEYGFIGKSIPTDNPAGQRIIFCGGEGTSSTTGAQITLYGANNTDSRRIVYNGDEHLFQSADVKPYNDNVTALGGPSNRFTTAYLGSNPIVT : QUERY
UniRef90_D5CWU1 : SRDFVYGATPNRTLPTFMSTSGVRTVPVPVDFTDDVAVQSLTVHAGTSGQVRAEVKLEGNYAIIAKKVPSDDVTAQRLIVSGGETTSSADGAMITLHGSGSSTPRRAVYNALEHLFENGDVKPYLDNVNALGGPGNRFSTVYLGSNPVVT : UniRef90_D5CWU1
UniRef90_K7QLS1 : SRDFKYGATPNRTLPVSMGTDGVRHVSAPVTFDNDVQVYSLTVDGTQQSAVR--IKLDGDYGVVAKNVPIKNPSKQRLILCGGETPYVTDGSLLQLYGSNHTYPNRAVLYAPGGAYTQNNFMPYLDGQVALGGASNRWSEVYASTGTINT : UniRef90_K7QLS1
UniRef90_P49714 : SRKFTYGATPGQAIPTFMGTDGIRNIPAPLYFTEDTKVGHLTLKASTSANIRSEMQMEGEYGFIGKSVPKDKPTGQRLIICGGEGTSSSSGAQITLHGSNSSNAKRITYNGNEHLFQGAPIMPAVDNQFAAGGPSNRFTTIYLGSDPVTT : UniRef90_P49714
UniRef90_D2XJ95 : SRDFKYGATPNRTIPVAMGVDGVRHVEAPLTFDNDVSVYSLEYDGTQQSAVRAR--FDGDYGLISKTVPTKTPSAQRLIVSGGDGASSSDGALLQLYGANHATPNRAIMYASGGFYSYNNFLPYLDSQVSLGSAGNRWTTVYATTGTINT : UniRef90_D2XJ95
UniRef90_A4UUQ0 : SRKFTYGATPGQAIPTFMGTDGIRTIPAPLHLSGDMTVEHLTLKASTSANIRSEMLMEREYGFIGKTIPKDNPTAQRVIISGGGGTAADTGAQITLHGAGSSTSRRAVYNANEHLFQSGAIMPYNDNVYPAGGPRNRFTTIHLTSDPIIT : UniRef90_A4UUQ0
UniRef90_S9ZI07 : ----------NLHLPVFRGTDGVRTVQSPVRFSEKVEFDNVALAVATVGRILASSKAGADYAMYGTDYLND---VNRLYLSSTHQANSQNGSTITLHNDKSEEGSIIDYRATAHKF--------------LGG-------VHINTGVINT : UniRef90_S9ZI07
UniRef90_S5F2Q0 : ----------NLHLPVFRGVNGVRTIQSPIEFDETTLFNKLA--SFVSMQVQKILATGDDYGMYGTDYLN---GVNRLYLSSTHKANSQNGSTITLHNDKSEEGSIIDYRATAHKF--------------LGG-------VHINTGVINT : UniRef90_S5F2Q0
UniRef90_UPI00037AB725 : ----------------------------------------------------------GNAGLSGQTVVIDSSAATGLQFLAGATTNVDFNKLGRLAYAQTDNSMRFTLNAEAYRMNAASFIPVVDNNKALGGATFRWSQVYAGTGTINT : UniRef90_UPI00037AB725
UniRef90_A0A011NGQ1 : -----------------------------------------------------------------------DSAADNLITLAAGASNSAGLAFAKAGGANLEGTSRIYIRADQYAFDSTSFSPMSDNARTLGGASNRWSTVYAGTGTINT : UniRef90_A0A011NGQ1
UniRef90_UPI00047DDBA4 : ----------------------------PISTTENTQ--NLVLIAFNS-RLRPKFIGAKDYTNISPA-NTDQSNFDKGIIAGGDGELTVNGALTRTKGERHGNETIGLLNKEATFFPTISIRPSADNVTSLGIASNRFSQVYAGTGSVNT : UniRef90_UPI00047DDBA4
UniRef90_UPI00047CC96C : --------------PVFIGSGALKTNGSPVLFDDTDYYGPISTTSNTKNLVLVAFNATLRPVFIGSSDYTNTANAGSDVFSSGGDSSINNGSLIKTSGERNGSSSVALINSDATFYPSISVRPSSDNSVSVGQASNRFSTVFAGTGTINT : UniRef90_UPI00047CC96C
UniRef90_J4YJG0 : -----------------------------------------TSPVTISSRTLGEIIRFTDAGTIGTTNPTTNPEVMRLQ----RTTAGLVGMQFT--NPNGSVSIRV----DASAANAGSFFSSGDNAVSCGTASFRWSTVFAGTGTINT : UniRef90_J4YJG0
UniRef90_D7YES4 : ----------------------------------------------------------------GKNIRID--TRNGLSVSTQTDTGSAGNNFLIIRRTGDIDSFELRTRGTAGAYTYINIKPTVDNVNSNGTSAFRWSQVYAGTGSINT : UniRef90_D7YES4
UniRef90_K9DC67 : ------------------------------------SVTGLSALGLTQGAAAAALTIDSAAGQYA-GISLRSGTGLRLRKSNAAESGSNAGSDLVLH--RHDDSGTAIGAAWQVRRSSGNVAPLTDNARTMGLPSQRWSVIHAASGTINT : UniRef90_K9DC67
UniRef90_UPI0003A9FB8C : ---------------------------------------------------------DRNLVVYSSDTWVKIANASRSYMIG-----PSNGSNLNIY-DETAGLNRLVLD------TAGNFFPGSDNNRTLGIAAARWSVLYAGTGSINT : UniRef90_UPI0003A9FB8C
UniRef90_Q9FZW3 : ---------------------------------------------------------------------NKAPSGGWVEIRSGST--LEDGAGINMYNTNSALGGRMRLYESVYFYQNGAIVPSTDNLQNMGQXSNRMRNIYAGTGAINT : UniRef90_Q9FZW3
UniRef90_UPI0003F98E8D : -------------------------------------------DGEANVSIGARTLLNGANGVVGTEAGINYTGNNSIIIGNKAMPNSNQDRLLWIDYGNDGNASPFIYGDMGNNIMNANLRPDTDASQSLGAPSRRWANIYASNGTINT : UniRef90_UPI0003F98E8D
UniRef90_UPI0003801AA0 : -----------------------------------TSVGRTLLAATTQAAQRTALALGTDQGNSGNTIPHCNSTVTNLTISNGHTNGNNPGTALTLSNSGTTTNYLVIDMASSIVYFRGNSVPAGDNLYSSGQAGNRWSQVYAVNGTINT : UniRef90_UPI0003801AA0
UniRef90_Z5UW95 : ----------------------------PYTFFNDRSFNAVTANSLTVNGVRSTSSSGIGYGGAA------GVKAMEWYFNGGTTPTH------RLVASSISG---MTLEAGGNLSVVGNIFPSTDNSYSLGTASNRVTTVYAVNSTINT : UniRef90_Z5UW95
UniRef90_X8L2Y6 : ---------------------------------NTVTANSLTVNGSVATAHRSTSSSGIGYG------GTAGVKAMEWYFNGGTTPTH------RLVASSISG---MTLEAGGNLSVVGNIFPSTDNSYSLGTASNRATTVYAANSTINT : UniRef90_X8L2Y6
UniRef90_UPI000467CD14 : ---------------------------------EQSGVYIEHLKAAQGANVAINVRQMDGYGYYAPNLGKMFQNGNAINWRGGATGNVTTDANGTYLGTTGDTGLKFV-SGNEVRLQQRALTPGNDNSTPLGDIVNRWSTVFAGTGSINT : UniRef90_UPI000467CD14
UniRef90_L4UI22 : --------------------------------SGDVTLQNSKLNASVGSSIELGSTTDSDFHSSGNNVDND-----GRIFCSGGSEDSGDGTIG-------FNSSIIQLNSKTEIVMGSGIRPSLDNTYDYGTASKRGRTAYFGTGSINT : UniRef90_L4UI22
UniRef90_H9UR49 : ------------------------------------------------------------------------SSGTGNIFIGTNAGSAISSGDNQLIIANQSGLMGPVSDENNYARFDASVQPATDNARNCGSASRRWNTIFAGTSTINT : UniRef90_H9UR49
UniRef90_Z5F9L8 : -------------------------VPA-YTFYNDRNFNAVTANSVTVNGVRSTVSMGIGYG--GASGVK----AAEWYFNGGITPS---------HRLVASSASGMTLEAGGNFSVVGNTFPAADGTYSLGTPSGRWSQVFASNSVIGT : UniRef90_Z5F9L8
UniRef90_U1Q6S8 : --------------------------------NGDLANDSVTVSAGTSASLGESTTLDVTSDGVGTDEL-DAGAVAGSNLSGGGGTISANGFTIELTLIGSGSPASIKLDATGSIFSTADVLPDTDNTHQLGGSPFRWTEVYAANG-VNT : UniRef90_U1Q6S8
UniRef90_C2TBJ3 : --------------------------------------------------------------MVGTEAGANYTGSNSIIIGNKANPTTNQDRLLWIDYGNDANETPFVYGANNIMNVRANLRPDKDVSQALGTPSRRWKALYAETSTINT : UniRef90_C2TBJ3
: 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141------- :
OrigSeq : SRDFRYGAVPNRAVPVFFDTNGVRTVPAPMEFTGDLGLGHVTIRASTSSNIRSEVLMEGEYGFIGKSIPTDNPAGQRIIFCGGEGTSSTTGAQITLYGANNTDSRRIVYNGDEHLFQSADVKPYNDNVTALGGPSNRFTTAYLGSNPIVT : OrigSeq
Jnet : ----EE------EEEEEE-----EEE---EEE----EEEEEEEE-----HHHHHHE-----EEEE-----------EEEEE-----------EEEEEE------EEEEEE----------EEEE-------------EEEEEE------- : Jnet
jhmm : ----EE------EEEEEE-----E-----EEE----EEEEEEE-------EEEEEE-----EEE-------------EEEE------------EEEEE------EEEEE-----EEE---EE-----------------EEEE------- : jhmm
jpssm : ----EE------EEEEEE-----EEEEEEEEE---EEEEEEEEE--HHHHHHHHHH-------EE-----------EEEEEE----------EEEEE--------EEEEE----------EEEEE------------EEEEE-------- : jpssm
Lupas 14 : ------------------------------------------------------------------------------------------------------------------------------------------------------ : Lupas 14
Lupas 21 : ------------------------------------------------------------------------------------------------------------------------------------------------------ : Lupas 21
Lupas 28 : ------------------------------------------------------------------------------------------------------------------------------------------------------ : Lupas 28
Jnet_25 : ---B-BBBBB--BBBBBBB--BB--B-BBB-B---B-B--BBB-B-B---BB-BB-B-B-BBBBB--B------B--BBBBB-----B---BBBBB-B-----BBBBBB-B-BBBB--B-BBBB-BBB--B-BB--BBBBBBB----B-- : Jnet_25
Jnet_5 : -------------BBBB--------B---B----------B---B-----B-------------B------------B-B-B-----------B-B----------B-------------B-B--------------B--B--------- : Jnet_5
Jnet_0 : --------------------------------------------------------------------------------------------------------------------------------------------B--------- : Jnet_0
Jnet Rel : 998434267874576785378851201307863751763677711311113321002688703403554567777318886156777777731787516778771578703677001773583113664566777630377416775278 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.