SILENT_MODE
BLOCK_FILE jp_S3DIuym.concise.blc
MAX_NSEQ 827
MAX_INPUT_LEN 829
OUTPUT_FILE jp_S3DIuym.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 126 816   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 817 126 826 H SPACE
SUB_CHARS 1 817 126 826 E SPACE
SUB_CHARS 1 817 126 826 - SPACE
STRAND 5 820 10
COLOUR_TEXT_REGION 5 820 10 820 51
STRAND 25 820 27
COLOUR_TEXT_REGION 25 820 27 820 51
STRAND 39 820 45
COLOUR_TEXT_REGION 39 820 45 820 51
STRAND 58 820 62
COLOUR_TEXT_REGION 58 820 62 820 51
STRAND 73 820 78
COLOUR_TEXT_REGION 73 820 78 820 51
STRAND 82 820 89
COLOUR_TEXT_REGION 82 820 89 820 51
STRAND 93 820 98
COLOUR_TEXT_REGION 93 820 98 820 51
STRAND 107 820 107
COLOUR_TEXT_REGION 107 820 107 820 51
STRAND 113 820 123
COLOUR_TEXT_REGION 113 820 123 820 51
STRAND 5 825 10
COLOUR_TEXT_REGION 5 825 10 825 51
STRAND 26 825 27
COLOUR_TEXT_REGION 26 825 27 825 51
STRAND 39 825 45
COLOUR_TEXT_REGION 39 825 45 825 51
STRAND 58 825 62
COLOUR_TEXT_REGION 58 825 62 825 51
STRAND 73 825 78
COLOUR_TEXT_REGION 73 825 78 825 51
STRAND 82 825 89
COLOUR_TEXT_REGION 82 825 89 825 51
STRAND 93 825 98
COLOUR_TEXT_REGION 93 825 98 825 51
STRAND 113 825 122
COLOUR_TEXT_REGION 113 825 122 825 51
STRAND 5 826 11
COLOUR_TEXT_REGION 5 826 11 826 51
STRAND 25 826 27
COLOUR_TEXT_REGION 25 826 27 826 51
STRAND 39 826 44
COLOUR_TEXT_REGION 39 826 44 826 51
STRAND 59 826 62
COLOUR_TEXT_REGION 59 826 62 826 51
STRAND 73 826 78
COLOUR_TEXT_REGION 73 826 78 826 51
STRAND 82 826 89
COLOUR_TEXT_REGION 82 826 89 826 51
STRAND 94 826 98
COLOUR_TEXT_REGION 94 826 98 826 51
STRAND 106 826 107
COLOUR_TEXT_REGION 106 826 107 826 51
STRAND 113 826 124
COLOUR_TEXT_REGION 113 826 124 826 51