SILENT_MODE BLOCK_FILE jp_mO_pdTH.concise.blc MAX_NSEQ 900 MAX_INPUT_LEN 902 OUTPUT_FILE jp_mO_pdTH.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 258 889 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 890 258 899 H SPACE SUB_CHARS 1 890 258 899 E SPACE SUB_CHARS 1 890 258 899 - SPACE STRAND 36 893 37 COLOUR_TEXT_REGION 36 893 37 893 51 STRAND 55 893 59 COLOUR_TEXT_REGION 55 893 59 893 51 STRAND 63 893 68 COLOUR_TEXT_REGION 63 893 68 893 51 STRAND 75 893 77 COLOUR_TEXT_REGION 75 893 77 893 51 STRAND 86 893 94 COLOUR_TEXT_REGION 86 893 94 893 51 STRAND 105 893 108 COLOUR_TEXT_REGION 105 893 108 893 51 STRAND 115 893 120 COLOUR_TEXT_REGION 115 893 120 893 51 STRAND 138 893 145 COLOUR_TEXT_REGION 138 893 145 893 51 STRAND 170 893 172 COLOUR_TEXT_REGION 170 893 172 893 51 STRAND 189 893 192 COLOUR_TEXT_REGION 189 893 192 893 51 STRAND 203 893 209 COLOUR_TEXT_REGION 203 893 209 893 51 STRAND 252 893 255 COLOUR_TEXT_REGION 252 893 255 893 51 HELIX 128 893 132 COLOUR_TEXT_REGION 128 893 132 893 50 HELIX 155 893 160 COLOUR_TEXT_REGION 155 893 160 893 50 HELIX 217 893 227 COLOUR_TEXT_REGION 217 893 227 893 50 STRAND 36 898 37 COLOUR_TEXT_REGION 36 898 37 898 51 STRAND 45 898 47 COLOUR_TEXT_REGION 45 898 47 898 51 STRAND 55 898 59 COLOUR_TEXT_REGION 55 898 59 898 51 STRAND 63 898 68 COLOUR_TEXT_REGION 63 898 68 898 51 STRAND 75 898 77 COLOUR_TEXT_REGION 75 898 77 898 51 STRAND 86 898 94 COLOUR_TEXT_REGION 86 898 94 898 51 STRAND 104 898 107 COLOUR_TEXT_REGION 104 898 107 898 51 STRAND 114 898 121 COLOUR_TEXT_REGION 114 898 121 898 51 STRAND 132 898 132 COLOUR_TEXT_REGION 132 898 132 898 51 STRAND 138 898 146 COLOUR_TEXT_REGION 138 898 146 898 51 STRAND 170 898 171 COLOUR_TEXT_REGION 170 898 171 898 51 STRAND 189 898 192 COLOUR_TEXT_REGION 189 898 192 898 51 STRAND 203 898 208 COLOUR_TEXT_REGION 203 898 208 898 51 STRAND 252 898 255 COLOUR_TEXT_REGION 252 898 255 898 51 HELIX 128 898 131 COLOUR_TEXT_REGION 128 898 131 898 50 HELIX 154 898 160 COLOUR_TEXT_REGION 154 898 160 898 50 HELIX 213 898 214 COLOUR_TEXT_REGION 213 898 214 898 50 HELIX 217 898 226 COLOUR_TEXT_REGION 217 898 226 898 50 STRAND 37 899 37 COLOUR_TEXT_REGION 37 899 37 899 51 STRAND 55 899 59 COLOUR_TEXT_REGION 55 899 59 899 51 STRAND 64 899 68 COLOUR_TEXT_REGION 64 899 68 899 51 STRAND 75 899 77 COLOUR_TEXT_REGION 75 899 77 899 51 STRAND 105 899 110 COLOUR_TEXT_REGION 105 899 110 899 51 STRAND 118 899 119 COLOUR_TEXT_REGION 118 899 119 899 51 STRAND 139 899 144 COLOUR_TEXT_REGION 139 899 144 899 51 STRAND 170 899 173 COLOUR_TEXT_REGION 170 899 173 899 51 STRAND 189 899 192 COLOUR_TEXT_REGION 189 899 192 899 51 STRAND 204 899 209 COLOUR_TEXT_REGION 204 899 209 899 51 STRAND 252 899 255 COLOUR_TEXT_REGION 252 899 255 899 51 HELIX 85 899 93 COLOUR_TEXT_REGION 85 899 93 899 50 HELIX 128 899 133 COLOUR_TEXT_REGION 128 899 133 899 50 HELIX 158 899 161 COLOUR_TEXT_REGION 158 899 161 899 50 HELIX 217 899 227 COLOUR_TEXT_REGION 217 899 227 899 50