SILENT_MODE
BLOCK_FILE jp_4f9g94t.concise.blc
MAX_NSEQ 896
MAX_INPUT_LEN 898
OUTPUT_FILE jp_4f9g94t.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 99 885   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 886 99 895 H SPACE
SUB_CHARS 1 886 99 895 E SPACE
SUB_CHARS 1 886 99 895 - SPACE
STRAND 6 889 11
COLOUR_TEXT_REGION 6 889 11 889 51
STRAND 19 889 26
COLOUR_TEXT_REGION 19 889 26 889 51
STRAND 34 889 42
COLOUR_TEXT_REGION 34 889 42 889 51
STRAND 49 889 53
COLOUR_TEXT_REGION 49 889 53 889 51
STRAND 58 889 63
COLOUR_TEXT_REGION 58 889 63 889 51
STRAND 72 889 81
COLOUR_TEXT_REGION 72 889 81 889 51
STRAND 90 889 98
COLOUR_TEXT_REGION 90 889 98 889 51
STRAND 5 894 10
COLOUR_TEXT_REGION 5 894 10 894 51
STRAND 19 894 27
COLOUR_TEXT_REGION 19 894 27 894 51
STRAND 35 894 42
COLOUR_TEXT_REGION 35 894 42 894 51
STRAND 50 894 53
COLOUR_TEXT_REGION 50 894 53 894 51
STRAND 57 894 63
COLOUR_TEXT_REGION 57 894 63 894 51
STRAND 72 894 81
COLOUR_TEXT_REGION 72 894 81 894 51
STRAND 90 894 97
COLOUR_TEXT_REGION 90 894 97 894 51
STRAND 7 895 11
COLOUR_TEXT_REGION 7 895 11 895 51
STRAND 18 895 25
COLOUR_TEXT_REGION 18 895 25 895 51
STRAND 33 895 41
COLOUR_TEXT_REGION 33 895 41 895 51
STRAND 49 895 53
COLOUR_TEXT_REGION 49 895 53 895 51
STRAND 58 895 64
COLOUR_TEXT_REGION 58 895 64 895 51
STRAND 72 895 81
COLOUR_TEXT_REGION 72 895 81 895 51
STRAND 90 895 98
COLOUR_TEXT_REGION 90 895 98 895 51