SILENT_MODE
BLOCK_FILE jp_onCs7ID.concise.blc
MAX_NSEQ 1039
MAX_INPUT_LEN 1041
OUTPUT_FILE jp_onCs7ID.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 177 1028   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 1029 177 1038 H SPACE
SUB_CHARS 1 1029 177 1038 E SPACE
SUB_CHARS 1 1029 177 1038 - SPACE
STRAND 17 1032 24
COLOUR_TEXT_REGION 17 1032 24 1032 51
STRAND 29 1032 37
COLOUR_TEXT_REGION 29 1032 37 1032 51
STRAND 42 1032 46
COLOUR_TEXT_REGION 42 1032 46 1032 51
STRAND 52 1032 56
COLOUR_TEXT_REGION 52 1032 56 1032 51
STRAND 60 1032 65
COLOUR_TEXT_REGION 60 1032 65 1032 51
STRAND 70 1032 73
COLOUR_TEXT_REGION 70 1032 73 1032 51
STRAND 97 1032 103
COLOUR_TEXT_REGION 97 1032 103 1032 51
STRAND 107 1032 112
COLOUR_TEXT_REGION 107 1032 112 1032 51
STRAND 119 1032 126
COLOUR_TEXT_REGION 119 1032 126 1032 51
STRAND 132 1032 139
COLOUR_TEXT_REGION 132 1032 139 1032 51
STRAND 144 1032 152
COLOUR_TEXT_REGION 144 1032 152 1032 51
STRAND 162 1032 164
COLOUR_TEXT_REGION 162 1032 164 1032 51
STRAND 171 1032 174
COLOUR_TEXT_REGION 171 1032 174 1032 51
HELIX 2 1032 12
COLOUR_TEXT_REGION 2 1032 12 1032 50
HELIX 84 1032 88
COLOUR_TEXT_REGION 84 1032 88 1032 50
STRAND 17 1037 24
COLOUR_TEXT_REGION 17 1037 24 1037 51
STRAND 29 1037 37
COLOUR_TEXT_REGION 29 1037 37 1037 51
STRAND 42 1037 46
COLOUR_TEXT_REGION 42 1037 46 1037 51
STRAND 52 1037 57
COLOUR_TEXT_REGION 52 1037 57 1037 51
STRAND 60 1037 65
COLOUR_TEXT_REGION 60 1037 65 1037 51
STRAND 70 1037 73
COLOUR_TEXT_REGION 70 1037 73 1037 51
STRAND 97 1037 103
COLOUR_TEXT_REGION 97 1037 103 1037 51
STRAND 106 1037 112
COLOUR_TEXT_REGION 106 1037 112 1037 51
STRAND 119 1037 126
COLOUR_TEXT_REGION 119 1037 126 1037 51
STRAND 132 1037 139
COLOUR_TEXT_REGION 132 1037 139 1037 51
STRAND 144 1037 151
COLOUR_TEXT_REGION 144 1037 151 1037 51
STRAND 162 1037 164
COLOUR_TEXT_REGION 162 1037 164 1037 51
STRAND 171 1037 174
COLOUR_TEXT_REGION 171 1037 174 1037 51
HELIX 2 1037 11
COLOUR_TEXT_REGION 2 1037 11 1037 50
HELIX 84 1037 88
COLOUR_TEXT_REGION 84 1037 88 1037 50
STRAND 16 1038 25
COLOUR_TEXT_REGION 16 1038 25 1038 51
STRAND 29 1038 38
COLOUR_TEXT_REGION 29 1038 38 1038 51
STRAND 42 1038 46
COLOUR_TEXT_REGION 42 1038 46 1038 51
STRAND 52 1038 56
COLOUR_TEXT_REGION 52 1038 56 1038 51
STRAND 60 1038 65
COLOUR_TEXT_REGION 60 1038 65 1038 51
STRAND 70 1038 74
COLOUR_TEXT_REGION 70 1038 74 1038 51
STRAND 100 1038 102
COLOUR_TEXT_REGION 100 1038 102 1038 51
STRAND 107 1038 112
COLOUR_TEXT_REGION 107 1038 112 1038 51
STRAND 120 1038 126
COLOUR_TEXT_REGION 120 1038 126 1038 51
STRAND 132 1038 139
COLOUR_TEXT_REGION 132 1038 139 1038 51
STRAND 144 1038 152
COLOUR_TEXT_REGION 144 1038 152 1038 51
STRAND 162 1038 165
COLOUR_TEXT_REGION 162 1038 165 1038 51
STRAND 171 1038 173
COLOUR_TEXT_REGION 171 1038 173 1038 51
HELIX 2 1038 12
COLOUR_TEXT_REGION 2 1038 12 1038 50
HELIX 84 1038 88
COLOUR_TEXT_REGION 84 1038 88 1038 50
HELIX 94 1038 96
COLOUR_TEXT_REGION 94 1038 96 1038 50