SILENT_MODE
BLOCK_FILE jp_ZqnvZCo.concise.blc
MAX_NSEQ 136
MAX_INPUT_LEN 138
OUTPUT_FILE jp_ZqnvZCo.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 324 125   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 126 324 135 H SPACE
SUB_CHARS 1 126 324 135 E SPACE
SUB_CHARS 1 126 324 135 - SPACE
STRAND 4 129 11
COLOUR_TEXT_REGION 4 129 11 129 51
STRAND 17 129 22
COLOUR_TEXT_REGION 17 129 22 129 51
STRAND 27 129 36
COLOUR_TEXT_REGION 27 129 36 129 51
STRAND 42 129 44
COLOUR_TEXT_REGION 42 129 44 129 51
STRAND 53 129 53
COLOUR_TEXT_REGION 53 129 53 129 51
STRAND 61 129 65
COLOUR_TEXT_REGION 61 129 65 129 51
STRAND 79 129 83
COLOUR_TEXT_REGION 79 129 83 129 51
STRAND 113 129 118
COLOUR_TEXT_REGION 113 129 118 129 51
STRAND 149 129 153
COLOUR_TEXT_REGION 149 129 153 129 51
STRAND 161 129 166
COLOUR_TEXT_REGION 161 129 166 129 51
STRAND 173 129 179
COLOUR_TEXT_REGION 173 129 179 129 51
STRAND 191 129 192
COLOUR_TEXT_REGION 191 129 192 129 51
STRAND 198 129 210
COLOUR_TEXT_REGION 198 129 210 129 51
STRAND 227 129 233
COLOUR_TEXT_REGION 227 129 233 129 51
STRAND 239 129 244
COLOUR_TEXT_REGION 239 129 244 129 51
STRAND 248 129 250
COLOUR_TEXT_REGION 248 129 250 129 51
STRAND 255 129 259
COLOUR_TEXT_REGION 255 129 259 129 51
STRAND 264 129 267
COLOUR_TEXT_REGION 264 129 267 129 51
STRAND 278 129 281
COLOUR_TEXT_REGION 278 129 281 129 51
STRAND 292 129 294
COLOUR_TEXT_REGION 292 129 294 129 51
STRAND 312 129 316
COLOUR_TEXT_REGION 312 129 316 129 51
HELIX 100 129 107
COLOUR_TEXT_REGION 100 129 107 129 50
HELIX 144 129 148
COLOUR_TEXT_REGION 144 129 148 129 50
HELIX 185 129 190
COLOUR_TEXT_REGION 185 129 190 129 50
HELIX 297 129 300
COLOUR_TEXT_REGION 297 129 300 129 50
STRAND 4 134 11
COLOUR_TEXT_REGION 4 134 11 134 51
STRAND 17 134 22
COLOUR_TEXT_REGION 17 134 22 134 51
STRAND 27 134 37
COLOUR_TEXT_REGION 27 134 37 134 51
STRAND 43 134 44
COLOUR_TEXT_REGION 43 134 44 134 51
STRAND 61 134 65
COLOUR_TEXT_REGION 61 134 65 134 51
STRAND 79 134 83
COLOUR_TEXT_REGION 79 134 83 134 51
STRAND 92 134 93
COLOUR_TEXT_REGION 92 134 93 134 51
STRAND 96 134 97
COLOUR_TEXT_REGION 96 134 97 134 51
STRAND 113 134 118
COLOUR_TEXT_REGION 113 134 118 134 51
STRAND 151 134 153
COLOUR_TEXT_REGION 151 134 153 134 51
STRAND 161 134 166
COLOUR_TEXT_REGION 161 134 166 134 51
STRAND 173 134 179
COLOUR_TEXT_REGION 173 134 179 134 51
STRAND 198 134 210
COLOUR_TEXT_REGION 198 134 210 134 51
STRAND 226 134 233
COLOUR_TEXT_REGION 226 134 233 134 51
STRAND 239 134 244
COLOUR_TEXT_REGION 239 134 244 134 51
STRAND 248 134 250
COLOUR_TEXT_REGION 248 134 250 134 51
STRAND 255 134 259
COLOUR_TEXT_REGION 255 134 259 134 51
STRAND 264 134 267
COLOUR_TEXT_REGION 264 134 267 134 51
STRAND 277 134 281
COLOUR_TEXT_REGION 277 134 281 134 51
STRAND 312 134 316
COLOUR_TEXT_REGION 312 134 316 134 51
HELIX 100 134 107
COLOUR_TEXT_REGION 100 134 107 134 50
HELIX 144 134 150
COLOUR_TEXT_REGION 144 134 150 134 50
HELIX 185 134 191
COLOUR_TEXT_REGION 185 134 191 134 50
HELIX 297 134 300
COLOUR_TEXT_REGION 297 134 300 134 50
HELIX 305 134 305
COLOUR_TEXT_REGION 305 134 305 134 50
STRAND 4 135 11
COLOUR_TEXT_REGION 4 135 11 135 51
STRAND 17 135 19
COLOUR_TEXT_REGION 17 135 19 135 51
STRAND 22 135 22
COLOUR_TEXT_REGION 22 135 22 135 51
STRAND 27 135 36
COLOUR_TEXT_REGION 27 135 36 135 51
STRAND 42 135 44
COLOUR_TEXT_REGION 42 135 44 135 51
STRAND 51 135 53
COLOUR_TEXT_REGION 51 135 53 135 51
STRAND 62 135 64
COLOUR_TEXT_REGION 62 135 64 135 51
STRAND 79 135 84
COLOUR_TEXT_REGION 79 135 84 135 51
STRAND 116 135 118
COLOUR_TEXT_REGION 116 135 118 135 51
STRAND 127 135 128
COLOUR_TEXT_REGION 127 135 128 135 51
STRAND 134 135 137
COLOUR_TEXT_REGION 134 135 137 135 51
STRAND 147 135 153
COLOUR_TEXT_REGION 147 135 153 135 51
STRAND 161 135 164
COLOUR_TEXT_REGION 161 135 164 135 51
STRAND 172 135 178
COLOUR_TEXT_REGION 172 135 178 135 51
STRAND 189 135 193
COLOUR_TEXT_REGION 189 135 193 135 51
STRAND 200 135 203
COLOUR_TEXT_REGION 200 135 203 135 51
STRAND 228 135 234
COLOUR_TEXT_REGION 228 135 234 135 51
STRAND 239 135 244
COLOUR_TEXT_REGION 239 135 244 135 51
STRAND 248 135 248
COLOUR_TEXT_REGION 248 135 248 135 51
STRAND 254 135 259
COLOUR_TEXT_REGION 254 135 259 135 51
STRAND 264 135 267
COLOUR_TEXT_REGION 264 135 267 135 51
STRAND 279 135 281
COLOUR_TEXT_REGION 279 135 281 135 51
STRAND 292 135 295
COLOUR_TEXT_REGION 292 135 295 135 51
STRAND 312 135 315
COLOUR_TEXT_REGION 312 135 315 135 51
HELIX 20 135 21
COLOUR_TEXT_REGION 20 135 21 135 50
HELIX 100 135 108
COLOUR_TEXT_REGION 100 135 108 135 50
HELIX 297 135 301
COLOUR_TEXT_REGION 297 135 301 135 50