SILENT_MODE BLOCK_FILE jp_hZoOz9M.concise.blc MAX_NSEQ 50 MAX_INPUT_LEN 50 OUTPUT_FILE jp_hZoOz9M.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 140 38 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 39 140 48 H SPACE SUB_CHARS 1 39 140 48 E SPACE SUB_CHARS 1 39 140 48 - SPACE STRAND 125 42 126 COLOUR_TEXT_REGION 125 42 126 42 51 HELIX 12 42 19 COLOUR_TEXT_REGION 12 42 19 42 50 HELIX 26 42 42 COLOUR_TEXT_REGION 26 42 42 42 50 HELIX 55 42 62 COLOUR_TEXT_REGION 55 42 62 42 50 HELIX 64 42 72 COLOUR_TEXT_REGION 64 42 72 42 50 HELIX 79 42 109 COLOUR_TEXT_REGION 79 42 109 42 50 HELIX 114 42 121 COLOUR_TEXT_REGION 114 42 121 42 50 STRAND 124 47 126 COLOUR_TEXT_REGION 124 47 126 47 51 HELIX 7 47 10 COLOUR_TEXT_REGION 7 47 10 47 50 HELIX 12 47 20 COLOUR_TEXT_REGION 12 47 20 47 50 HELIX 22 47 22 COLOUR_TEXT_REGION 22 47 22 47 50 HELIX 24 47 24 COLOUR_TEXT_REGION 24 47 24 47 50 HELIX 26 47 43 COLOUR_TEXT_REGION 26 47 43 47 50 HELIX 54 47 62 COLOUR_TEXT_REGION 54 47 62 47 50 HELIX 64 47 73 COLOUR_TEXT_REGION 64 47 73 47 50 HELIX 79 47 110 COLOUR_TEXT_REGION 79 47 110 47 50 HELIX 114 47 121 COLOUR_TEXT_REGION 114 47 121 47 50 STRAND 13 48 15 COLOUR_TEXT_REGION 13 48 15 48 51 HELIX 63 48 72 COLOUR_TEXT_REGION 63 48 72 48 50 HELIX 80 48 86 COLOUR_TEXT_REGION 80 48 86 48 50 HELIX 92 48 106 COLOUR_TEXT_REGION 92 48 106 48 50 HELIX 113 48 121 COLOUR_TEXT_REGION 113 48 121 48 50