QUERY           : MDIDPYKEFGATVELLSFLPSDFFPSVRDLLDTAAALYRDALESPEHCSPHHTALRQAILCWGDLMTLATWVGTNLEDPASRDLVVSYVNTNVGLKFRQLLWFHISCLTFGRETVLEYLVSFGVWIRTPPAARPPNAPIL : QUERY 
UniRef90_B3VB76 : MDIDPYKEFGASVQLLSFLPSDFFPSIRDLLDTAAALYRDALESPEHCSAHHTALRQAILCWGDLMSLATWVGGNLEDPVSRELVIGYVNTTVGLKFRQLLWFHISCLMFGRETVVEYLVSFGVWIRTPPAYRPPNAPIL : UniRef90_B3VB76
UniRef90_D6QW16 : MDIDPYKEFGASVELXSFLPSDFFPSIRDLLDTASALYREALESPEHXSXHHTALRQAILCWGELXNLATWVGSNLXDPASREXVVXYVNXNMGLKIRXLLWFHISCLTFGXXTVLEYLVSFGVWIRTPPXYRPPNAPIL : UniRef90_D6QW16
UniRef90_A6MFZ2 : MDIDPYKEFGASVELLSFLPADFFPSIRDLLDTASALYREALESPEHCSPHHTALRQAILCWGELMNLPTWVGSNLEDPASWKLLATCRNVKMGPKISQLLWFHISWLMFGRETVLEYLGSFGVWIRTPTAYRPQNAPIL : UniRef90_A6MFZ2
UniRef90_Q9E946 : MDIDPYKEFGATVELLSFLPSDFFPSGRDLLDTARALYQEALTSADHYSSHHTALRQAIWCWEDFISLASWVGNELEDPISKELVITYVDTNLGLKIRQLLWFHISCLTFGRETVLEYLVSFGVWIRTPPAYRPQNAPIL : UniRef90_Q9E946
UniRef90_U5JH54 : MNIDLYKELAAFLDLLSFLPSDFFLSIREHADTASAGHREALEYPEHCSPHHTALMQAIVCWAELKNLATSLGRNLEAPASRELVVSYVNANRRVKIRQLLWFHISCFTFGRETVLEYLVSFGVWIRTPPAYRPQNAPIL : UniRef90_U5JH54
UniRef90_O39876 : ------------------MPADFFPSVHDLLDTASALYREALESPEHCSPHHTAIRQAILCWGELMTLASWVGNNLQDPASRELVVNYVNTHMGLKIRQLLWFHISCITFGRETVLEYLVSFGVWIRTPPAYRPPNAPIL : UniRef90_O39876
UniRef90_Q9WP95 : MDIDPYKEFGATVELLSFLPSDFFPSVGDLLDTASALYREALESPEHCSPHHTALRQAILCWGELMTLATWVG---------------------LKIRQLLWFHISCLTFGRETVLEYLVSFGVWIRTPPAYRPPNAPIL : UniRef90_Q9WP95
UniRef90_D3TJ97 : MDIDPYKEFGASAELLSFLPSDFFPSVRDLLDTASALYRQALESPEHCSPHHTALRQAILCWVELMNLATWVGSNLERQALESPEHCSPH-HTALRQAILCWVELMNLTWVGSNLEEYLVSFGVWIRTPTAYRPPNAPIL : UniRef90_D3TJ97
UniRef90_Q9E0N5 : MDIDPYKEFGASVELLSFLPSDFFPSVRDLLYTASALFRDALESFEHCTPHHTALRQAIFCWGDLMNLGTWVGGNLEDQAFIDAVVSFVNNNMGLKFRQLLWFHIFCLTFGRYTVIEYLVSFG----------------- : UniRef90_Q9E0N5
UniRef90_B6CIV0 : MDIDPYKXFGXSVELLSFLPSDFFPSVRDLLXTASXLYRDALXSPEHCTPXHTALRQAILCWGELMTLASWVGNNLEDPAARDLVVNYVNTNMGLKIKQLLXFHISCLTFGXKTVLEYLVSFGVXI-------------- : UniRef90_B6CIV0
UniRef90_U5JHF9 : MDIDPYKEFGDSVELLSFLPWDSFPYLRHLLDPA------------------SALRQAILCWGELMNLATWVGSNLEDPASRELVVSYVNVNMGLKIRQLLWFHISCLTFGRETVLEYLVSFGVWIRTPPAYRPPNAPIL : UniRef90_U5JHF9
UniRef90_S5WFP4 : MDIDPYKEFGASVELLSFLPSDFFPSIRDLLDTASALYRQALESPEHCSPHHTAIRQAILCWGEVMNLATWVGVNLEDPASRELIVNYVNVNMGLKFRQLLWFHLSCLTFGR---------------------------- : UniRef90_S5WFP4
UniRef90_P0C6J2 : MDIDPYKEFGSSYQLLNFLPLDFFPDLNALVDTATALYEEELTGREHCSPHHTAIRQALVCWDELTKLIAWMSSNITSEQVRTIIVNHVNDTWGLKVRQSLWFHLSCLTFGQHTVQEFLVSFGVWIRTPAPYRPPNAPIL : UniRef90_P0C6J2
UniRef90_W8PAA2 : MDIDPYNAFGATAELLTFLPSDFFPSVRELQKTASSLYREVLKSPEHCSPHHTAIRQPILCWSELMTLVTWVSNNFQDPASRDIVVNYVNTHMGLEIRQLLWLLISCICFGRKTVLEYLVSFGVWIRTPP---------- : UniRef90_W8PAA2
UniRef90_B2Y6T9 : MDIDTYKEXGXTVELLSFXPXDFFPSVRDXLDTASALYXEXLEXXEHCSPXHTAXRQXFVCWGELMXLATWVGNNLEDPASRDLVVNYVNTNMGLKIRQLLWFHIXXLTFGREXVLEYLVSFGVWIRTPPPXRPXXXPIL : UniRef90_B2Y6T9
UniRef90_E0ZNA5 : MDIDPYKKFGATGELLSFFPSDFFPSVRDFLDTPSPLYRDALEFPDHCTPPHTALRQAIFCWGDLMSLATWGGVNLEDQASRELVVSYVNPNMGLKFRQLLWFPLSCLTFGRKTVLEYLVSFGV---------------- : UniRef90_E0ZNA5
UniRef90_D0PWB1 : -----------------------------LLDTASSLYRDALESPKHCSPHHTALRQAILCWGELMTLATWVGVNLEDPASRDLVVSYVNTNMGLKFRQLLWFHISCLTFGRETVIEYLVSFGVWIRTPPAYRPPNAP-- : UniRef90_D0PWB1
UniRef90_J7IK08 : MDIDPYKEFGASVELLSFLPSDFFPGVRDLLDTAAALFRDDLESPEHCTPHHTALRQAILCWGELMSLATWVGVNLDDQASRDQVVSYVNTNMGLKFRQLLWFHVSCLKFG----------------------------- : UniRef90_J7IK08
UniRef90_M4PSH7 : MDIDPYKEFGASAQLISFLPEDFFPPLNDLVDTLVALYEEELAGREHCTPHHTAIRALLNCWEETTRLATWVRASVEGTTVQDAIVAYVQSTIGLRMRQQLWFHLSCLTFGQSTTIEFLISFGTWARTPQAYRPPNAPIL : UniRef90_M4PSH7
UniRef90_U5JLY4 : MDIDPYKEFGASVELLSFLPSDFFPSTRDLLDTASALYREALESPEHCSPHHTALRQAILCWGELMNLATWVGSNLEDPA------TWVGSN---------------LEDPASTVLEYLVSFGVWIRTPPAYRPPNAPIL : UniRef90_U5JLY4
UniRef90_W5UPB5 : MDIDPYKEFGASVQLLSFLPNDFFPSVRDLLDTAFALYREALESPEHCSPHHTAIRQAILCWGELMNLATWVGSNLEDQASRELVVGYVNVNMGLKFRQLLW-------------------------------------- : UniRef90_W5UPB5
UniRef90_D8V9U6 : ----------------------------------SALYREALESPEHCSPHHTALRQAILCWGELMNLATWVGSNLEDPASRELVVSYVNVNMGLKIRQLLWFHISCLTFGRETVLEYLVSFGVWIRTPP---------- : UniRef90_D8V9U6
UniRef90_U3M6H7 : --LDIYKEFGVSDVLVSFLPDDFFPTLQQLLESVNALYEDELTGPNHCSPHHTALRHLIMCGVELRDFIDWMHEQGLSPDADALLAGYLRSKYLKHITKAIWYHLSCLTFGKQTVHEYLVSFGTWIRTPAAYRPVNAPIL : UniRef90_U3M6H7
UniRef90_U5JRC3 : IDTDPHKEFGGSVELLSFLPSDLFPFIRDILDTASAMYRDTLECPEHCSPDHTALRQALLCWGVGLNLATWVGSNLYD-----------------------------LTFGRETVLEYLVSFGVWIRTPPAYRPPNAPIL : UniRef90_U5JRC3
UniRef90_I0DG87 : MDIDPYKEFGASVELLSFLPSDFFPSIXDLLDXASALYREALESPEHCSPXHTALRQAILCWGELMNLAXWVGSNLEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFGRETVLEYLVSFGVWIRT------------ : UniRef90_I0DG87
UniRef90_U5JRD2 : MSMTPYTELGAEAEEFSELPSDLFPSIQALLDTASDLYREALESPEHCSPPPSALRQVILCWGEMMNQITQVGSNLEDPASR----------------------------GRETVLEYLVSFGVWIRTPPAYRPPNAPIL : UniRef90_U5JRD2
UniRef90_L0HCF9 : MDIGPYKKFGASVEVLSFLASELFSSTPDFLHTPPALYQEAFESPEHCLPPPKPLTPPILCWGEVMNLATWVGSNLEDPASRELVVSYVNVNMGLKIRQLLWFHISWLTF------------------------------ : UniRef90_L0HCF9
UniRef90_E0ZNT1 : MDIDPYKEFGATVELLSFLPHDFYPSVRDLLDTASALYREALESPEHCSAHHTALRQAILCWGELTSLGTWVNNNLQYQASRDLVVNYV--------------------------------------------------- : UniRef90_E0ZNT1
UniRef90_B6ULI1 : MDIDPYKEFGASVELLSFLPSDFFPSIRDLLDTASALYREALESPEHCSPHHTALRQAVLCW--------------------------------------------------ETVLEYLVSFGVWIRTPPAYRPPNAPIL : UniRef90_B6ULI1
UniRef90_Q6X5G8 : -DIDPYKEFGATVELLSFLPSDFFPSVRDLLDTASALYRE-----------HTALRQAILCWGKLVTLATWVGGNLEDPISRDLVVSYVNTNMGLKFR------------------------------------------ : UniRef90_Q6X5G8
UniRef90_Q1MSN2 : MDIDPYKEFGATVELLSFLPSDFFPSVKDLLDTASALFRDALESPEHCTPHHTALRQAILCWGDLLNLATWVG------------------------------------------------------------------- : UniRef90_Q1MSN2
UniRef90_A8WE38 : ----------------------------------------------------------ILCWGELMTLATWVGANLDDPGSRDLVVSYVNTNMGLKFRQLLWFHISCLTFGRDTVVEYLVSFGVWIRTP----------- : UniRef90_A8WE38
UniRef90_U5XME9 : MDIDPYKEFGSSYQLLNFLPLDFFPDLNALVDTATALYEEELTGREHCSPHHTAIRQALVCWDELTKLIAWMSSNITSEQVR-------------------------------------------TRTPAPYRPPNAPIL : UniRef90_U5XME9
UniRef90_U5JJ50 : -DIDPYKEFGAYV---AFLYSEFFFFFRFVLDILDAADAESAEAPEPSSHHQPPPPPPLQLGLDLGDLVTWAARNMGD--------------------------------GRETVLEYLVSFGVWIRTPPAYRPPNAPIL : UniRef90_U5JJ50

                : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131------- :
OrigSeq         : MDIDPYKEFGATVELLSFLPSDFFPSVRDLLDTAAALYRDALESPEHCSPHHTALRQAILCWGDLMTLATWVGTNLEDPASRDLVVSYVNTNVGLKFRQLLWFHISCLTFGRETVLEYLVSFGVWIRTPPAARPPNAPIL : OrigSeq

Jnet            : -----------HHHHHHHH------HHHHHHHHHHHHHHHHH------------HHHHHHHH-HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH---EE-------------- : Jnet
jhmm            : ------HHHH-HHHHHHHHH-H-H-HHHHHHHHHHHHHHHHHH----------HHHHHHHHH-HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH--EEE-------------- : jhmm
jpssm           : ------------EEE-----------------------------------------------HHHHHHHHHH-------HHHHHHH-----HHHHHHHHHHHHHHH------HHHHHHHHH------------------- : jpssm

Lupas 14        : -------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21        : -------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28        : -------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25         : --B--B--BB--B-BBBBBB--BB--B--BB-BBB-BB--BB-B---B------B--BBBBBB-B--BBBBB---B----B--BBB-BB---BBB-BB-BBBBBBBBBBBB--BB--BBBBBBBBB-BB----B---B-- : Jnet_25
Jnet_5          : --------------BB------B----------------------------------BB-B---B--BB--B------------------------B-------B---------B-------BB---------------- : Jnet_5
Jnet_0          : ------------------------------------------------------------------------------------------------------------------B------------------------- : Jnet_0
Jnet Rel        : 89887722246133332210747370122222111111211017777777777011233210054435532006777610556665431011789999999987544302752688887733612067777667777889 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.