SILENT_MODE
BLOCK_FILE jp_ywWCsH3.concise.blc
MAX_NSEQ 1080
MAX_INPUT_LEN 1082
OUTPUT_FILE jp_ywWCsH3.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 166 1069   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 1070 166 1079 H SPACE
SUB_CHARS 1 1070 166 1079 E SPACE
SUB_CHARS 1 1070 166 1079 - SPACE
STRAND 32 1073 38
COLOUR_TEXT_REGION 32 1073 38 1073 51
STRAND 56 1073 61
COLOUR_TEXT_REGION 56 1073 61 1073 51
STRAND 85 1073 90
COLOUR_TEXT_REGION 85 1073 90 1073 51
STRAND 148 1073 156
COLOUR_TEXT_REGION 148 1073 156 1073 51
STRAND 161 1073 164
COLOUR_TEXT_REGION 161 1073 164 1073 51
HELIX 4 1073 17
COLOUR_TEXT_REGION 4 1073 17 1073 50
HELIX 45 1073 49
COLOUR_TEXT_REGION 45 1073 49 1073 50
HELIX 69 1073 80
COLOUR_TEXT_REGION 69 1073 80 1073 50
HELIX 101 1073 109
COLOUR_TEXT_REGION 101 1073 109 1073 50
HELIX 125 1073 140
COLOUR_TEXT_REGION 125 1073 140 1073 50
STRAND 32 1078 38
COLOUR_TEXT_REGION 32 1078 38 1078 51
STRAND 56 1078 61
COLOUR_TEXT_REGION 56 1078 61 1078 51
STRAND 85 1078 90
COLOUR_TEXT_REGION 85 1078 90 1078 51
STRAND 97 1078 99
COLOUR_TEXT_REGION 97 1078 99 1078 51
STRAND 148 1078 156
COLOUR_TEXT_REGION 148 1078 156 1078 51
STRAND 161 1078 164
COLOUR_TEXT_REGION 161 1078 164 1078 51
HELIX 4 1078 17
COLOUR_TEXT_REGION 4 1078 17 1078 50
HELIX 45 1078 49
COLOUR_TEXT_REGION 45 1078 49 1078 50
HELIX 69 1078 80
COLOUR_TEXT_REGION 69 1078 80 1078 50
HELIX 101 1078 109
COLOUR_TEXT_REGION 101 1078 109 1078 50
HELIX 125 1078 140
COLOUR_TEXT_REGION 125 1078 140 1078 50
STRAND 32 1079 38
COLOUR_TEXT_REGION 32 1079 38 1079 51
STRAND 56 1079 60
COLOUR_TEXT_REGION 56 1079 60 1079 51
STRAND 85 1079 90
COLOUR_TEXT_REGION 85 1079 90 1079 51
STRAND 149 1079 156
COLOUR_TEXT_REGION 149 1079 156 1079 51
STRAND 161 1079 164
COLOUR_TEXT_REGION 161 1079 164 1079 51
HELIX 3 1079 17
COLOUR_TEXT_REGION 3 1079 17 1079 50
HELIX 45 1079 49
COLOUR_TEXT_REGION 45 1079 49 1079 50
HELIX 68 1079 80
COLOUR_TEXT_REGION 68 1079 80 1079 50
HELIX 102 1079 109
COLOUR_TEXT_REGION 102 1079 109 1079 50
HELIX 124 1079 140
COLOUR_TEXT_REGION 124 1079 140 1079 50