SILENT_MODE
BLOCK_FILE jp_msMMl7M.concise.blc
MAX_NSEQ 730
MAX_INPUT_LEN 732
OUTPUT_FILE jp_msMMl7M.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 132 719   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 720 132 729 H SPACE
SUB_CHARS 1 720 132 729 E SPACE
SUB_CHARS 1 720 132 729 - SPACE
STRAND 28 723 32
COLOUR_TEXT_REGION 28 723 32 723 51
STRAND 88 723 91
COLOUR_TEXT_REGION 88 723 91 723 51
STRAND 111 723 118
COLOUR_TEXT_REGION 111 723 118 723 51
STRAND 125 723 131
COLOUR_TEXT_REGION 125 723 131 723 51
HELIX 8 723 21
COLOUR_TEXT_REGION 8 723 21 723 50
HELIX 34 723 44
COLOUR_TEXT_REGION 34 723 44 723 50
HELIX 93 723 102
COLOUR_TEXT_REGION 93 723 102 723 50
STRAND 28 728 32
COLOUR_TEXT_REGION 28 728 32 728 51
STRAND 88 728 91
COLOUR_TEXT_REGION 88 728 91 728 51
STRAND 111 728 117
COLOUR_TEXT_REGION 111 728 117 728 51
STRAND 125 728 130
COLOUR_TEXT_REGION 125 728 130 728 51
HELIX 8 728 20
COLOUR_TEXT_REGION 8 728 20 728 50
HELIX 34 728 44
COLOUR_TEXT_REGION 34 728 44 728 50
HELIX 93 728 102
COLOUR_TEXT_REGION 93 728 102 728 50
STRAND 29 729 33
COLOUR_TEXT_REGION 29 729 33 729 51
STRAND 71 729 71
COLOUR_TEXT_REGION 71 729 71 729 51
STRAND 78 729 78
COLOUR_TEXT_REGION 78 729 78 729 51
STRAND 88 729 91
COLOUR_TEXT_REGION 88 729 91 729 51
STRAND 111 729 118
COLOUR_TEXT_REGION 111 729 118 729 51
STRAND 125 729 131
COLOUR_TEXT_REGION 125 729 131 729 51
HELIX 8 729 21
COLOUR_TEXT_REGION 8 729 21 729 50
HELIX 34 729 44
COLOUR_TEXT_REGION 34 729 44 729 50
HELIX 93 729 101
COLOUR_TEXT_REGION 93 729 101 729 50