SILENT_MODE BLOCK_FILE jp_MYujjxI.concise.blc MAX_NSEQ 990 MAX_INPUT_LEN 992 OUTPUT_FILE jp_MYujjxI.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 77 979 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 980 77 989 H SPACE SUB_CHARS 1 980 77 989 E SPACE SUB_CHARS 1 980 77 989 - SPACE STRAND 7 983 11 COLOUR_TEXT_REGION 7 983 11 983 51 STRAND 35 983 40 COLOUR_TEXT_REGION 35 983 40 983 51 STRAND 59 983 64 COLOUR_TEXT_REGION 59 983 64 983 51 STRAND 69 983 75 COLOUR_TEXT_REGION 69 983 75 983 51 HELIX 18 983 28 COLOUR_TEXT_REGION 18 983 28 983 50 HELIX 46 983 55 COLOUR_TEXT_REGION 46 983 55 983 50 STRAND 7 988 11 COLOUR_TEXT_REGION 7 988 11 988 51 STRAND 35 988 40 COLOUR_TEXT_REGION 35 988 40 988 51 STRAND 59 988 64 COLOUR_TEXT_REGION 59 988 64 988 51 STRAND 69 988 75 COLOUR_TEXT_REGION 69 988 75 988 51 HELIX 18 988 28 COLOUR_TEXT_REGION 18 988 28 988 50 HELIX 46 988 55 COLOUR_TEXT_REGION 46 988 55 988 50 STRAND 7 989 10 COLOUR_TEXT_REGION 7 989 10 989 51 STRAND 35 989 40 COLOUR_TEXT_REGION 35 989 40 989 51 STRAND 59 989 65 COLOUR_TEXT_REGION 59 989 65 989 51 STRAND 69 989 75 COLOUR_TEXT_REGION 69 989 75 989 51 HELIX 6 989 6 COLOUR_TEXT_REGION 6 989 6 989 50 HELIX 17 989 28 COLOUR_TEXT_REGION 17 989 28 989 50 HELIX 46 989 55 COLOUR_TEXT_REGION 46 989 55 989 50