SILENT_MODE BLOCK_FILE jp_XcMYCms.concise.blc MAX_NSEQ 936 MAX_INPUT_LEN 938 OUTPUT_FILE jp_XcMYCms.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 195 925 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 926 195 935 H SPACE SUB_CHARS 1 926 195 935 E SPACE SUB_CHARS 1 926 195 935 - SPACE STRAND 11 929 17 COLOUR_TEXT_REGION 11 929 17 929 51 STRAND 51 929 56 COLOUR_TEXT_REGION 51 929 56 929 51 STRAND 86 929 89 COLOUR_TEXT_REGION 86 929 89 929 51 STRAND 111 929 118 COLOUR_TEXT_REGION 111 929 118 929 51 STRAND 138 929 142 COLOUR_TEXT_REGION 138 929 142 929 51 STRAND 177 929 179 COLOUR_TEXT_REGION 177 929 179 929 51 HELIX 31 929 46 COLOUR_TEXT_REGION 31 929 46 929 50 HELIX 101 929 106 COLOUR_TEXT_REGION 101 929 106 929 50 HELIX 123 929 134 COLOUR_TEXT_REGION 123 929 134 929 50 HELIX 158 929 172 COLOUR_TEXT_REGION 158 929 172 929 50 HELIX 181 929 190 COLOUR_TEXT_REGION 181 929 190 929 50 STRAND 11 934 18 COLOUR_TEXT_REGION 11 934 18 934 51 STRAND 51 934 57 COLOUR_TEXT_REGION 51 934 57 934 51 STRAND 86 934 90 COLOUR_TEXT_REGION 86 934 90 934 51 STRAND 112 934 120 COLOUR_TEXT_REGION 112 934 120 934 51 STRAND 138 934 142 COLOUR_TEXT_REGION 138 934 142 934 51 STRAND 177 934 179 COLOUR_TEXT_REGION 177 934 179 934 51 HELIX 31 934 47 COLOUR_TEXT_REGION 31 934 47 934 50 HELIX 101 934 107 COLOUR_TEXT_REGION 101 934 107 934 50 HELIX 123 934 133 COLOUR_TEXT_REGION 123 934 133 934 50 HELIX 158 934 172 COLOUR_TEXT_REGION 158 934 172 934 50 HELIX 181 934 190 COLOUR_TEXT_REGION 181 934 190 934 50 STRAND 11 935 16 COLOUR_TEXT_REGION 11 935 16 935 51 STRAND 51 935 56 COLOUR_TEXT_REGION 51 935 56 935 51 STRAND 110 935 115 COLOUR_TEXT_REGION 110 935 115 935 51 STRAND 139 935 141 COLOUR_TEXT_REGION 139 935 141 935 51 STRAND 176 935 179 COLOUR_TEXT_REGION 176 935 179 935 51 HELIX 32 935 46 COLOUR_TEXT_REGION 32 935 46 935 50 HELIX 101 935 105 COLOUR_TEXT_REGION 101 935 105 935 50 HELIX 125 935 134 COLOUR_TEXT_REGION 125 935 134 935 50 HELIX 157 935 172 COLOUR_TEXT_REGION 157 935 172 935 50 HELIX 181 935 190 COLOUR_TEXT_REGION 181 935 190 935 50