SILENT_MODE BLOCK_FILE jp_JA1M09c.concise.blc MAX_NSEQ 551 MAX_INPUT_LEN 553 OUTPUT_FILE jp_JA1M09c.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 236 540 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 541 236 550 H SPACE SUB_CHARS 1 541 236 550 E SPACE SUB_CHARS 1 541 236 550 - SPACE STRAND 136 544 139 COLOUR_TEXT_REGION 136 544 139 544 51 HELIX 8 544 21 COLOUR_TEXT_REGION 8 544 21 544 50 HELIX 24 544 36 COLOUR_TEXT_REGION 24 544 36 544 50 HELIX 45 544 57 COLOUR_TEXT_REGION 45 544 57 544 50 HELIX 60 544 72 COLOUR_TEXT_REGION 60 544 72 544 50 HELIX 80 544 110 COLOUR_TEXT_REGION 80 544 110 544 50 HELIX 119 544 135 COLOUR_TEXT_REGION 119 544 135 544 50 HELIX 145 544 165 COLOUR_TEXT_REGION 145 544 165 544 50 HELIX 173 544 188 COLOUR_TEXT_REGION 173 544 188 544 50 HELIX 192 544 209 COLOUR_TEXT_REGION 192 544 209 544 50 HELIX 218 544 230 COLOUR_TEXT_REGION 218 544 230 544 50 STRAND 134 549 139 COLOUR_TEXT_REGION 134 549 139 549 51 HELIX 8 549 21 COLOUR_TEXT_REGION 8 549 21 549 50 HELIX 24 549 36 COLOUR_TEXT_REGION 24 549 36 549 50 HELIX 43 549 58 COLOUR_TEXT_REGION 43 549 58 549 50 HELIX 60 549 72 COLOUR_TEXT_REGION 60 549 72 549 50 HELIX 80 549 111 COLOUR_TEXT_REGION 80 549 111 549 50 HELIX 119 549 129 COLOUR_TEXT_REGION 119 549 129 549 50 HELIX 132 549 133 COLOUR_TEXT_REGION 132 549 133 549 50 HELIX 144 549 165 COLOUR_TEXT_REGION 144 549 165 549 50 HELIX 173 549 188 COLOUR_TEXT_REGION 173 549 188 549 50 HELIX 192 549 210 COLOUR_TEXT_REGION 192 549 210 549 50 HELIX 218 549 233 COLOUR_TEXT_REGION 218 549 233 549 50 STRAND 138 550 139 COLOUR_TEXT_REGION 138 550 139 550 51 HELIX 8 550 21 COLOUR_TEXT_REGION 8 550 21 550 50 HELIX 24 550 36 COLOUR_TEXT_REGION 24 550 36 550 50 HELIX 46 550 56 COLOUR_TEXT_REGION 46 550 56 550 50 HELIX 61 550 72 COLOUR_TEXT_REGION 61 550 72 550 50 HELIX 79 550 107 COLOUR_TEXT_REGION 79 550 107 550 50 HELIX 119 550 133 COLOUR_TEXT_REGION 119 550 133 550 50 HELIX 135 550 137 COLOUR_TEXT_REGION 135 550 137 550 50 HELIX 146 550 164 COLOUR_TEXT_REGION 146 550 164 550 50 HELIX 174 550 188 COLOUR_TEXT_REGION 174 550 188 550 50 HELIX 192 550 207 COLOUR_TEXT_REGION 192 550 207 550 50 HELIX 218 550 230 COLOUR_TEXT_REGION 218 550 230 550 50