SILENT_MODE
BLOCK_FILE jp_mtRTSXe.concise.blc
MAX_NSEQ 1018
MAX_INPUT_LEN 1020
OUTPUT_FILE jp_mtRTSXe.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 151 1007   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 1008 151 1017 H SPACE
SUB_CHARS 1 1008 151 1017 E SPACE
SUB_CHARS 1 1008 151 1017 - SPACE
STRAND 3 1011 7
COLOUR_TEXT_REGION 3 1011 7 1011 51
STRAND 29 1011 34
COLOUR_TEXT_REGION 29 1011 34 1011 51
STRAND 41 1011 48
COLOUR_TEXT_REGION 41 1011 48 1011 51
STRAND 63 1011 68
COLOUR_TEXT_REGION 63 1011 68 1011 51
STRAND 86 1011 88
COLOUR_TEXT_REGION 86 1011 88 1011 51
STRAND 107 1011 116
COLOUR_TEXT_REGION 107 1011 116 1011 51
STRAND 141 1011 149
COLOUR_TEXT_REGION 141 1011 149 1011 51
HELIX 128 1011 136
COLOUR_TEXT_REGION 128 1011 136 1011 50
STRAND 3 1016 7
COLOUR_TEXT_REGION 3 1016 7 1016 51
STRAND 29 1016 34
COLOUR_TEXT_REGION 29 1016 34 1016 51
STRAND 41 1016 48
COLOUR_TEXT_REGION 41 1016 48 1016 51
STRAND 62 1016 68
COLOUR_TEXT_REGION 62 1016 68 1016 51
STRAND 86 1016 88
COLOUR_TEXT_REGION 86 1016 88 1016 51
STRAND 108 1016 115
COLOUR_TEXT_REGION 108 1016 115 1016 51
STRAND 142 1016 149
COLOUR_TEXT_REGION 142 1016 149 1016 51
HELIX 128 1016 136
COLOUR_TEXT_REGION 128 1016 136 1016 50
STRAND 3 1017 7
COLOUR_TEXT_REGION 3 1017 7 1017 51
STRAND 28 1017 34
COLOUR_TEXT_REGION 28 1017 34 1017 51
STRAND 40 1017 48
COLOUR_TEXT_REGION 40 1017 48 1017 51
STRAND 64 1017 69
COLOUR_TEXT_REGION 64 1017 69 1017 51
STRAND 86 1017 88
COLOUR_TEXT_REGION 86 1017 88 1017 51
STRAND 107 1017 116
COLOUR_TEXT_REGION 107 1017 116 1017 51
STRAND 141 1017 149
COLOUR_TEXT_REGION 141 1017 149 1017 51
HELIX 18 1017 20
COLOUR_TEXT_REGION 18 1017 20 1017 50
HELIX 128 1017 136
COLOUR_TEXT_REGION 128 1017 136 1017 50