SILENT_MODE BLOCK_FILE jp_y8RePk5.concise.blc MAX_NSEQ 1290 MAX_INPUT_LEN 1292 OUTPUT_FILE jp_y8RePk5.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 367 1279 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 1280 367 1289 H SPACE SUB_CHARS 1 1280 367 1289 E SPACE SUB_CHARS 1 1280 367 1289 - SPACE STRAND 7 1283 7 COLOUR_TEXT_REGION 7 1283 7 1283 51 STRAND 27 1283 34 COLOUR_TEXT_REGION 27 1283 34 1283 51 STRAND 50 1283 56 COLOUR_TEXT_REGION 50 1283 56 1283 51 STRAND 67 1283 70 COLOUR_TEXT_REGION 67 1283 70 1283 51 STRAND 95 1283 97 COLOUR_TEXT_REGION 95 1283 97 1283 51 STRAND 129 1283 135 COLOUR_TEXT_REGION 129 1283 135 1283 51 STRAND 187 1283 193 COLOUR_TEXT_REGION 187 1283 193 1283 51 STRAND 198 1283 205 COLOUR_TEXT_REGION 198 1283 205 1283 51 STRAND 247 1283 253 COLOUR_TEXT_REGION 247 1283 253 1283 51 STRAND 286 1283 292 COLOUR_TEXT_REGION 286 1283 292 1283 51 STRAND 349 1283 351 COLOUR_TEXT_REGION 349 1283 351 1283 51 HELIX 85 1283 90 COLOUR_TEXT_REGION 85 1283 90 1283 50 HELIX 103 1283 117 COLOUR_TEXT_REGION 103 1283 117 1283 50 HELIX 149 1283 159 COLOUR_TEXT_REGION 149 1283 159 1283 50 HELIX 174 1283 179 COLOUR_TEXT_REGION 174 1283 179 1283 50 HELIX 259 1283 271 COLOUR_TEXT_REGION 259 1283 271 1283 50 HELIX 307 1283 338 COLOUR_TEXT_REGION 307 1283 338 1283 50 HELIX 355 1283 364 COLOUR_TEXT_REGION 355 1283 364 1283 50 STRAND 27 1288 34 COLOUR_TEXT_REGION 27 1288 34 1288 51 STRAND 51 1288 56 COLOUR_TEXT_REGION 51 1288 56 1288 51 STRAND 67 1288 68 COLOUR_TEXT_REGION 67 1288 68 1288 51 STRAND 95 1288 97 COLOUR_TEXT_REGION 95 1288 97 1288 51 STRAND 129 1288 135 COLOUR_TEXT_REGION 129 1288 135 1288 51 STRAND 174 1288 178 COLOUR_TEXT_REGION 174 1288 178 1288 51 STRAND 186 1288 193 COLOUR_TEXT_REGION 186 1288 193 1288 51 STRAND 197 1288 205 COLOUR_TEXT_REGION 197 1288 205 1288 51 STRAND 247 1288 253 COLOUR_TEXT_REGION 247 1288 253 1288 51 STRAND 276 1288 277 COLOUR_TEXT_REGION 276 1288 277 1288 51 STRAND 286 1288 292 COLOUR_TEXT_REGION 286 1288 292 1288 51 STRAND 349 1288 351 COLOUR_TEXT_REGION 349 1288 351 1288 51 HELIX 103 1288 117 COLOUR_TEXT_REGION 103 1288 117 1288 50 HELIX 149 1288 159 COLOUR_TEXT_REGION 149 1288 159 1288 50 HELIX 259 1288 270 COLOUR_TEXT_REGION 259 1288 270 1288 50 HELIX 314 1288 338 COLOUR_TEXT_REGION 314 1288 338 1288 50 HELIX 355 1288 364 COLOUR_TEXT_REGION 355 1288 364 1288 50 STRAND 7 1289 10 COLOUR_TEXT_REGION 7 1289 10 1289 51 STRAND 27 1289 35 COLOUR_TEXT_REGION 27 1289 35 1289 51 STRAND 49 1289 56 COLOUR_TEXT_REGION 49 1289 56 1289 51 STRAND 67 1289 72 COLOUR_TEXT_REGION 67 1289 72 1289 51 STRAND 95 1289 97 COLOUR_TEXT_REGION 95 1289 97 1289 51 STRAND 130 1289 135 COLOUR_TEXT_REGION 130 1289 135 1289 51 STRAND 188 1289 193 COLOUR_TEXT_REGION 188 1289 193 1289 51 STRAND 198 1289 205 COLOUR_TEXT_REGION 198 1289 205 1289 51 STRAND 215 1289 216 COLOUR_TEXT_REGION 215 1289 216 1289 51 STRAND 220 1289 220 COLOUR_TEXT_REGION 220 1289 220 1289 51 STRAND 247 1289 253 COLOUR_TEXT_REGION 247 1289 253 1289 51 STRAND 286 1289 291 COLOUR_TEXT_REGION 286 1289 291 1289 51 STRAND 338 1289 338 COLOUR_TEXT_REGION 338 1289 338 1289 51 STRAND 341 1289 343 COLOUR_TEXT_REGION 341 1289 343 1289 51 STRAND 349 1289 351 COLOUR_TEXT_REGION 349 1289 351 1289 51 HELIX 85 1289 91 COLOUR_TEXT_REGION 85 1289 91 1289 50 HELIX 102 1289 117 COLOUR_TEXT_REGION 102 1289 117 1289 50 HELIX 149 1289 159 COLOUR_TEXT_REGION 149 1289 159 1289 50 HELIX 174 1289 181 COLOUR_TEXT_REGION 174 1289 181 1289 50 HELIX 259 1289 272 COLOUR_TEXT_REGION 259 1289 272 1289 50 HELIX 306 1289 337 COLOUR_TEXT_REGION 306 1289 337 1289 50 HELIX 355 1289 365 COLOUR_TEXT_REGION 355 1289 365 1289 50