SILENT_MODE
BLOCK_FILE jp_N3bzRMP.concise.blc
MAX_NSEQ 853
MAX_INPUT_LEN 855
OUTPUT_FILE jp_N3bzRMP.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 161 842   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 843 161 852 H SPACE
SUB_CHARS 1 843 161 852 E SPACE
SUB_CHARS 1 843 161 852 - SPACE
STRAND 3 846 8
COLOUR_TEXT_REGION 3 846 8 846 51
STRAND 30 846 33
COLOUR_TEXT_REGION 30 846 33 846 51
STRAND 58 846 61
COLOUR_TEXT_REGION 58 846 61 846 51
STRAND 80 846 83
COLOUR_TEXT_REGION 80 846 83 846 51
STRAND 93 846 94
COLOUR_TEXT_REGION 93 846 94 846 51
STRAND 101 846 106
COLOUR_TEXT_REGION 101 846 106 846 51
STRAND 124 846 128
COLOUR_TEXT_REGION 124 846 128 846 51
HELIX 15 846 26
COLOUR_TEXT_REGION 15 846 26 846 50
HELIX 43 846 49
COLOUR_TEXT_REGION 43 846 49 846 50
HELIX 65 846 75
COLOUR_TEXT_REGION 65 846 75 846 50
HELIX 114 846 120
COLOUR_TEXT_REGION 114 846 120 846 50
HELIX 136 846 153
COLOUR_TEXT_REGION 136 846 153 846 50
STRAND 3 851 8
COLOUR_TEXT_REGION 3 851 8 851 51
STRAND 31 851 33
COLOUR_TEXT_REGION 31 851 33 851 51
STRAND 54 851 55
COLOUR_TEXT_REGION 54 851 55 851 51
STRAND 58 851 61
COLOUR_TEXT_REGION 58 851 61 851 51
STRAND 79 851 84
COLOUR_TEXT_REGION 79 851 84 851 51
STRAND 101 851 106
COLOUR_TEXT_REGION 101 851 106 851 51
STRAND 125 851 127
COLOUR_TEXT_REGION 125 851 127 851 51
HELIX 16 851 26
COLOUR_TEXT_REGION 16 851 26 851 50
HELIX 43 851 49
COLOUR_TEXT_REGION 43 851 49 851 50
HELIX 53 851 53
COLOUR_TEXT_REGION 53 851 53 851 50
HELIX 64 851 74
COLOUR_TEXT_REGION 64 851 74 851 50
HELIX 114 851 119
COLOUR_TEXT_REGION 114 851 119 851 50
HELIX 136 851 153
COLOUR_TEXT_REGION 136 851 153 851 50
STRAND 3 852 8
COLOUR_TEXT_REGION 3 852 8 852 51
STRAND 29 852 33
COLOUR_TEXT_REGION 29 852 33 852 51
STRAND 58 852 61
COLOUR_TEXT_REGION 58 852 61 852 51
STRAND 93 852 95
COLOUR_TEXT_REGION 93 852 95 852 51
STRAND 101 852 106
COLOUR_TEXT_REGION 101 852 106 852 51
STRAND 124 852 128
COLOUR_TEXT_REGION 124 852 128 852 51
STRAND 136 852 137
COLOUR_TEXT_REGION 136 852 137 852 51
HELIX 14 852 26
COLOUR_TEXT_REGION 14 852 26 852 50
HELIX 43 852 47
COLOUR_TEXT_REGION 43 852 47 852 50
HELIX 66 852 75
COLOUR_TEXT_REGION 66 852 75 852 50
HELIX 114 852 123
COLOUR_TEXT_REGION 114 852 123 852 50
HELIX 139 852 153
COLOUR_TEXT_REGION 139 852 153 852 50