QUERY : TTCCPSIVARSNFNVCRLPGTPEALCATYTGCIIIPGATCPGDYAN : QUERY
UniRef90_R0GYM0 : KSCCPNTTARNCYNVCRLPGTPRPTCASLCGCKIVEGPTCPPG--- : UniRef90_R0GYM0
UniRef90_Q43227 : KSCCPSTAARNCYNVCRFPGTPRPVCAATCGCKIITGTKCPPDYPK : UniRef90_Q43227
UniRef90_R0F7R7 : KSCCPNTTARNIYNTCRLPGTPRPTCASLSGCKIISSGRCPNGYTH : UniRef90_R0F7R7
UniRef90_K3YJV8 : KSCCPSTTARNVYNTCRLTGASRPTCAKLSGCQIISGNKCKPPNDH : UniRef90_K3YJV8
UniRef90_P09617 : KSCCKNTTGRNCYNACRFAGGSRPVCATACGCKIISGPTCPRDYPK : UniRef90_P09617
UniRef90_I1H3Q0 : KSCCKTTMARNCYNVCRFGGGARPVCARSCGCKIIKGSTCPNGFP- : UniRef90_I1H3Q0
UniRef90_Q43225 : KSCCRNTTARNCYNVCRLPGTPRPVCAATCDCKIISSGKCPPGYEK : UniRef90_Q43225
UniRef90_R0GP19 : KSCCPNTAPRNCYNGCRIPGTAKGTCAILCGCKLIEGTTCPPGYTH : UniRef90_R0GP19
UniRef90_Q8LT00 : KSCCKSTTAINCYNVCRLAGAPRPVCAGPCGCKLLDVTTCPSDWPK : UniRef90_Q8LT00
UniRef90_R0F343 : KSCCPTSTARNIYNSCRVVGGSRPTCAGLSGCKIVDGS-CPNGYPN : UniRef90_R0F343
UniRef90_R0HUF3 : KSCCPSTSARNIYNTCRFTGGSRPFCASLSGCKIVDG-KCPNGFTH : UniRef90_R0HUF3
UniRef90_I1H3P6 : KSCCKTTIARNCYNLCRAAGGARQVCASTCGCKIISGNKCPSSFPK : UniRef90_I1H3P6
UniRef90_R0F705 : KSCCPNTTGRNCYNVCRLTGAPRPICANGCGCKIVNSGSCPNGYTH : UniRef90_R0F705
UniRef90_R0H0H7 : KSCCPSTTARNVYNVCRAGGGSRPTCTSVSGCKIVD-KTCPPGYPH : UniRef90_R0H0H7
UniRef90_Q002B9 : KSCCQTTTARNIYNSCRLAGGSRERCASLSGCKHVTGNTCSPGWEK : UniRef90_Q002B9
UniRef90_Q8LSZ9 : KSCCPSTSARNCYNVCRLTGTSRPRCASLCGCKIVDG-TCPDGYSK : UniRef90_Q8LSZ9
UniRef90_R0H2A6 : KSCCPTTTARNVYNTCRLAGLSRAVCANRSGCRLVNGS-CPNGYPK : UniRef90_R0H2A6
UniRef90_Q9S975 : KSCCPSITARNTYNVCRLPGTPRPVCASISGCKILSVTKCPSNLP- : UniRef90_Q9S975
UniRef90_Q9SBK8 : KICCPRTIDRNIYNACRLTGASMTNCANLSGCKIVSGTTCPPGYTH : UniRef90_Q9SBK8
UniRef90_P01538 : KSCCPNTTGRNIYNACRLTGAPRPTCAKLSGCKIISGSTCPSDYPK : UniRef90_P01538
UniRef90_R0H6L0 : KSCCPNRTARNVYNVCRLGPAPSPVCARLSGCKIINGSTCPNGYTN : UniRef90_R0H6L0
UniRef90_R0GLD4 : -SCCPDKTSRNCYNACRLIGTYTEACAKACGCKIVGGSTCPSGYTH : UniRef90_R0GLD4
UniRef90_R0HVZ8 : KSCCPSSTARNIYNTCRFGGVPSSICVGLSGCLLIGGSKCPNGYT- : UniRef90_R0HVZ8
UniRef90_Q9S976 : KSCCPSITARNTYNICRLPGTPRPVCATLSGCIIQSDSTCKPPYP- : UniRef90_Q9S976
UniRef90_B7F9C4 : KSCCPTTTARNIYNACRFALGTRERCSKLSGCKIVDG-KCKPPYIH : UniRef90_B7F9C4
UniRef90_Q9S980 : KSCCPTMAARIQYNACRALGTPRPVCAALSGCKILDVTKCPPDYR- : UniRef90_Q9S980
UniRef90_I1H3Q6 : KSCCKTTTARNCYNVCRFTGASRLACANICGCTITSGTTCPNDLRK : UniRef90_I1H3Q6
UniRef90_Q5Z554 : KSCCPSTSVRNVYNSCRFAGGSREACAKLSTCKHFDGS-CQPPYDH : UniRef90_Q5Z554
UniRef90_Q5Z551 : KSCCPSTSARNVYNSCRFAGGSREACAKLSTCKHFDGS-CQPPYDH : UniRef90_Q5Z551
UniRef90_Q5Z551 : --CCPSSTARNIYTSCRFVGGSYDSCARLSGCKI-DFGRCQPPYDH : UniRef90_Q5Z551
UniRef90_Q41609 : KSCFPSTAAKYCYNACRLPGCPETICAARCGCKIISSGNCPPGY-- : UniRef90_Q41609
UniRef90_I1H3P2 : KSCCKNTSSRFCYNACRKLGGTRPECASRCGCIHISGNRCPADYP- : UniRef90_I1H3P2
UniRef90_R0FHE8 : KSCCPSITSRNFYKSCCIVGFPIGKCAKLSGCKIITGTTCPNGYSK : UniRef90_R0FHE8
UniRef90_Q43224 : KSCCRTTAARNCYNVCRLGGTPQTLCARTCDCIHITTGNCPRSHPK : UniRef90_Q43224
UniRef90_P01539 : KSCCPTTTARNIYNTCRFGGGSRPVCAKLSGCKIISGTKCDSGWNH : UniRef90_P01539
UniRef90_Q38L62 : KSCCPSTTARNIYNTCRLR-LPASSCADLSGCKVIDGGTCPTGWTN : UniRef90_Q38L62
UniRef90_R0GWY4 : KSCCPNTFARNIYNTCRFFKFPREDCRKNSGCTFVTSGTCPDGFP- : UniRef90_R0GWY4
UniRef90_M0URZ0 : -------TGRNCYNVCRFGGGSRPVCASACGCKIISGPTCPRDYPK : UniRef90_M0URZ0
UniRef90_Q9S981 : KSCCPTPIARKTYVVCRLTGSTIASCIKYSGCITISGTQCPNGYPH : UniRef90_Q9S981
UniRef90_C5WS97 : KSCCPSRIARNMYNTCRFRGASRETCARFARCEIVQGKCKDPHY-- : UniRef90_C5WS97
UniRef90_Q8LT01 : NTCCKDDIARNCYNVCRIPGTPTFICANMCRCIITRRNECPNDYPK : UniRef90_Q8LT01
UniRef90_Q9S974 : KSCCPTKSARNTFDVCRLTGTSMGLCAAISECKILSVTKCPSNLP- : UniRef90_Q9S974
UniRef90_Q9ZNY5 : KSCCKSTLGRNCYNLCRTRGAQK-LCANFCRCKLISSTSCPKEFPK : UniRef90_Q9ZNY5
UniRef90_P07504 : KSCCRNTWARNCYNVCRLPGTSREICAKKCDCKIISGTTCPSDYPK : UniRef90_P07504
UniRef90_M0VF48 : KSCCCSTTTRNCYNVCRVTGSSRPTCASLCGCKILEKCVPPSDRLN : UniRef90_M0VF48
UniRef90_P01537 : KSCCPBTTGRBIYBTCRFGGGSRZVCARISGCKIISASTCPS---- : UniRef90_P01537
UniRef90_V4L0H3 : --CCRSLWERNRYSACRFAYLSIAYCAEFSGCKIVDG-KCPPGY-- : UniRef90_V4L0H3
UniRef90_Q9C8D6 : --CCPSIQARTFYNACLFAVGSPSSCIRNSSCLDISESTCPRGYTN : UniRef90_Q9C8D6
UniRef90_P60057 : KSCCRNTLARNCYNACRFTGGSQPTCGILCDCIHVTTTTCPSSHP- : UniRef90_P60057
UniRef90_M7YXV1 : KSCCRDTRSRNCYNVCLLVHPSTP-CSKMCGCVLTRDSTCPREYPK : UniRef90_M7YXV1
UniRef90_UPI000234EA73 : -SCCSSTEGRRCYLRCRLT---VEACLEECGCIIISGSTCPSAFP- : UniRef90_UPI000234EA73
UniRef90_D7MI46 : KLCCPNQTARSKYLLC-IRRPSPEHCLALSTCKIISGNICPPGYTN : UniRef90_D7MI46
UniRef90_M0W8Y0 : --CCCSIEGRNCYNRCRIDGDSRETCAGTCACKFLDKCISP----- : UniRef90_M0W8Y0
UniRef90_R0GZI4 : -------------NTCRLPGAPMSVCAGLSGCKIVDGS-CPNGYPN : UniRef90_R0GZI4
UniRef90_T1MWT7 : KSCCRDTRSRNCYNQGRTQDKNCSSCSKMCGCVLTRDPTCPSEYPN : UniRef90_T1MWT7
UniRef90_M0VHI5 : KSCCCSTTTRNCYNVCRVTGSSHPTCASLCG--------------- : UniRef90_M0VHI5
: 1---------11--------21--------31--------41---- :
OrigSeq : TTCCPSIVARSNFNVCRLPGTPEALCATYTGCIIIPGATCPGDYAN : OrigSeq
Jnet : ---------HHHEEEE------HHHHHH----EE------------ : Jnet
jhmm : ------HHHHHHEEEEE-----HHHHHHH---EE------------ : jhmm
jpssm : ------------HHE-------HHHHH-----EEE----------- : jpssm
Lupas 14 : ---------------------------------------------- : Lupas 14
Lupas 21 : ---------------------------------------------- : Lupas 21
Lupas 28 : ---------------------------------------------- : Lupas 28
Jnet_25 : --B-----BB-BBBBBBB-------BB-BBBB-BB----B---B-- : Jnet_25
Jnet_5 : ------------B--B---------B---B-B-------------- : Jnet_5
Jnet_0 : -----------------------------B---------------- : Jnet_0
Jnet Rel : 9988871101100203178863233312067434146777777889 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.