SILENT_MODE
BLOCK_FILE jp_vtXuKKM.concise.blc
MAX_NSEQ 288
MAX_INPUT_LEN 290
OUTPUT_FILE jp_vtXuKKM.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 97 277   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 278 97 287 H SPACE
SUB_CHARS 1 278 97 287 E SPACE
SUB_CHARS 1 278 97 287 - SPACE
STRAND 7 281 11
COLOUR_TEXT_REGION 7 281 11 281 51
STRAND 31 281 34
COLOUR_TEXT_REGION 31 281 34 281 51
STRAND 38 281 45
COLOUR_TEXT_REGION 38 281 45 281 51
STRAND 48 281 54
COLOUR_TEXT_REGION 48 281 54 281 51
STRAND 61 281 65
COLOUR_TEXT_REGION 61 281 65 281 51
STRAND 72 281 75
COLOUR_TEXT_REGION 72 281 75 281 51
STRAND 79 281 84
COLOUR_TEXT_REGION 79 281 84 281 51
STRAND 89 281 95
COLOUR_TEXT_REGION 89 281 95 281 51
STRAND 7 286 11
COLOUR_TEXT_REGION 7 286 11 286 51
STRAND 31 286 34
COLOUR_TEXT_REGION 31 286 34 286 51
STRAND 38 286 45
COLOUR_TEXT_REGION 38 286 45 286 51
STRAND 48 286 54
COLOUR_TEXT_REGION 48 286 54 286 51
STRAND 61 286 65
COLOUR_TEXT_REGION 61 286 65 286 51
STRAND 72 286 75
COLOUR_TEXT_REGION 72 286 75 286 51
STRAND 79 286 84
COLOUR_TEXT_REGION 79 286 84 286 51
STRAND 89 286 95
COLOUR_TEXT_REGION 89 286 95 286 51
STRAND 7 287 11
COLOUR_TEXT_REGION 7 287 11 287 51
STRAND 31 287 34
COLOUR_TEXT_REGION 31 287 34 287 51
STRAND 37 287 45
COLOUR_TEXT_REGION 37 287 45 287 51
STRAND 48 287 54
COLOUR_TEXT_REGION 48 287 54 287 51
STRAND 60 287 65
COLOUR_TEXT_REGION 60 287 65 287 51
STRAND 71 287 75
COLOUR_TEXT_REGION 71 287 75 287 51
STRAND 79 287 84
COLOUR_TEXT_REGION 79 287 84 287 51
STRAND 89 287 95
COLOUR_TEXT_REGION 89 287 95 287 51