SILENT_MODE
BLOCK_FILE jp_9Mf5l9O.concise.blc
MAX_NSEQ 1282
MAX_INPUT_LEN 1284
OUTPUT_FILE jp_9Mf5l9O.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 116 1271   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 1272 116 1281 H SPACE
SUB_CHARS 1 1272 116 1281 E SPACE
SUB_CHARS 1 1272 116 1281 - SPACE
STRAND 3 1275 7
COLOUR_TEXT_REGION 3 1275 7 1275 51
STRAND 37 1275 41
COLOUR_TEXT_REGION 37 1275 41 1275 51
STRAND 78 1275 81
COLOUR_TEXT_REGION 78 1275 81 1275 51
HELIX 12 1275 29
COLOUR_TEXT_REGION 12 1275 29 1275 50
HELIX 47 1275 53
COLOUR_TEXT_REGION 47 1275 53 1275 50
HELIX 59 1275 73
COLOUR_TEXT_REGION 59 1275 73 1275 50
HELIX 85 1275 95
COLOUR_TEXT_REGION 85 1275 95 1275 50
HELIX 102 1275 114
COLOUR_TEXT_REGION 102 1275 114 1275 50
STRAND 3 1280 7
COLOUR_TEXT_REGION 3 1280 7 1280 51
STRAND 38 1280 41
COLOUR_TEXT_REGION 38 1280 41 1280 51
STRAND 78 1280 81
COLOUR_TEXT_REGION 78 1280 81 1280 51
HELIX 12 1280 29
COLOUR_TEXT_REGION 12 1280 29 1280 50
HELIX 47 1280 53
COLOUR_TEXT_REGION 47 1280 53 1280 50
HELIX 58 1280 73
COLOUR_TEXT_REGION 58 1280 73 1280 50
HELIX 86 1280 95
COLOUR_TEXT_REGION 86 1280 95 1280 50
HELIX 102 1280 114
COLOUR_TEXT_REGION 102 1280 114 1280 50
STRAND 3 1281 7
COLOUR_TEXT_REGION 3 1281 7 1281 51
STRAND 36 1281 41
COLOUR_TEXT_REGION 36 1281 41 1281 51
STRAND 78 1281 82
COLOUR_TEXT_REGION 78 1281 82 1281 51
STRAND 101 1281 102
COLOUR_TEXT_REGION 101 1281 102 1281 51
HELIX 12 1281 29
COLOUR_TEXT_REGION 12 1281 29 1281 50
HELIX 46 1281 53
COLOUR_TEXT_REGION 46 1281 53 1281 50
HELIX 59 1281 73
COLOUR_TEXT_REGION 59 1281 73 1281 50
HELIX 85 1281 95
COLOUR_TEXT_REGION 85 1281 95 1281 50
HELIX 103 1281 114
COLOUR_TEXT_REGION 103 1281 114 1281 50