SILENT_MODE
BLOCK_FILE jp_iYJitzn.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_iYJitzn.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 51 33   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 34 51 43 H SPACE
SUB_CHARS 1 34 51 43 E SPACE
SUB_CHARS 1 34 51 43 - SPACE
STRAND 5 37 7
COLOUR_TEXT_REGION 5 37 7 37 51
HELIX 9 37 24
COLOUR_TEXT_REGION 9 37 24 37 50
HELIX 32 37 48
COLOUR_TEXT_REGION 32 37 48 37 50
STRAND 6 42 7
COLOUR_TEXT_REGION 6 42 7 42 51
HELIX 9 42 24
COLOUR_TEXT_REGION 9 42 24 42 50
HELIX 32 42 49
COLOUR_TEXT_REGION 32 42 49 42 50
STRAND 3 43 6
COLOUR_TEXT_REGION 3 43 6 43 51
HELIX 9 43 24
COLOUR_TEXT_REGION 9 43 24 43 50
HELIX 31 43 48
COLOUR_TEXT_REGION 31 43 48 43 50