SILENT_MODE
BLOCK_FILE jp_mbIbBQX.concise.blc
MAX_NSEQ 648
MAX_INPUT_LEN 650
OUTPUT_FILE jp_mbIbBQX.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 161 637   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 638 161 647 H SPACE
SUB_CHARS 1 638 161 647 E SPACE
SUB_CHARS 1 638 161 647 - SPACE
STRAND 4 641 8
COLOUR_TEXT_REGION 4 641 8 641 51
STRAND 32 641 37
COLOUR_TEXT_REGION 32 641 37 641 51
STRAND 58 641 64
COLOUR_TEXT_REGION 58 641 64 641 51
STRAND 82 641 86
COLOUR_TEXT_REGION 82 641 86 641 51
STRAND 112 641 115
COLOUR_TEXT_REGION 112 641 115 641 51
HELIX 14 641 26
COLOUR_TEXT_REGION 14 641 26 641 50
HELIX 42 641 53
COLOUR_TEXT_REGION 42 641 53 641 50
HELIX 95 641 104
COLOUR_TEXT_REGION 95 641 104 641 50
HELIX 121 641 132
COLOUR_TEXT_REGION 121 641 132 641 50
HELIX 136 641 156
COLOUR_TEXT_REGION 136 641 156 641 50
STRAND 4 646 8
COLOUR_TEXT_REGION 4 646 8 646 51
STRAND 31 646 37
COLOUR_TEXT_REGION 31 646 37 646 51
STRAND 58 646 63
COLOUR_TEXT_REGION 58 646 63 646 51
STRAND 73 646 74
COLOUR_TEXT_REGION 73 646 74 646 51
STRAND 82 646 86
COLOUR_TEXT_REGION 82 646 86 646 51
STRAND 111 646 115
COLOUR_TEXT_REGION 111 646 115 646 51
HELIX 14 646 26
COLOUR_TEXT_REGION 14 646 26 646 50
HELIX 42 646 54
COLOUR_TEXT_REGION 42 646 54 646 50
HELIX 95 646 103
COLOUR_TEXT_REGION 95 646 103 646 50
HELIX 121 646 132
COLOUR_TEXT_REGION 121 646 132 646 50
HELIX 136 646 156
COLOUR_TEXT_REGION 136 646 156 646 50
STRAND 3 647 8
COLOUR_TEXT_REGION 3 647 8 647 51
STRAND 34 647 36
COLOUR_TEXT_REGION 34 647 36 647 51
STRAND 58 647 64
COLOUR_TEXT_REGION 58 647 64 647 51
STRAND 81 647 86
COLOUR_TEXT_REGION 81 647 86 647 51
STRAND 113 647 114
COLOUR_TEXT_REGION 113 647 114 647 51
HELIX 14 647 27
COLOUR_TEXT_REGION 14 647 27 647 50
HELIX 42 647 53
COLOUR_TEXT_REGION 42 647 53 647 50
HELIX 95 647 104
COLOUR_TEXT_REGION 95 647 104 647 50
HELIX 121 647 131
COLOUR_TEXT_REGION 121 647 131 647 50
HELIX 136 647 156
COLOUR_TEXT_REGION 136 647 156 647 50