SILENT_MODE
BLOCK_FILE jp_JVlzVLe.concise.blc
MAX_NSEQ 952
MAX_INPUT_LEN 954
OUTPUT_FILE jp_JVlzVLe.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 138 941   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 942 138 951 H SPACE
SUB_CHARS 1 942 138 951 E SPACE
SUB_CHARS 1 942 138 951 - SPACE
STRAND 32 945 39
COLOUR_TEXT_REGION 32 945 39 945 51
STRAND 94 945 100
COLOUR_TEXT_REGION 94 945 100 945 51
STRAND 105 945 110
COLOUR_TEXT_REGION 105 945 110 945 51
HELIX 7 945 27
COLOUR_TEXT_REGION 7 945 27 945 50
HELIX 47 945 60
COLOUR_TEXT_REGION 47 945 60 945 50
HELIX 66 945 73
COLOUR_TEXT_REGION 66 945 73 945 50
HELIX 80 945 87
COLOUR_TEXT_REGION 80 945 87 945 50
HELIX 113 945 134
COLOUR_TEXT_REGION 113 945 134 945 50
STRAND 32 950 39
COLOUR_TEXT_REGION 32 950 39 950 51
STRAND 95 950 100
COLOUR_TEXT_REGION 95 950 100 950 51
STRAND 105 950 110
COLOUR_TEXT_REGION 105 950 110 950 51
HELIX 7 950 27
COLOUR_TEXT_REGION 7 950 27 950 50
HELIX 48 950 60
COLOUR_TEXT_REGION 48 950 60 950 50
HELIX 66 950 73
COLOUR_TEXT_REGION 66 950 73 950 50
HELIX 80 950 88
COLOUR_TEXT_REGION 80 950 88 950 50
HELIX 113 950 134
COLOUR_TEXT_REGION 113 950 134 950 50
STRAND 31 951 39
COLOUR_TEXT_REGION 31 951 39 951 51
STRAND 94 951 100
COLOUR_TEXT_REGION 94 951 100 951 51
STRAND 105 951 111
COLOUR_TEXT_REGION 105 951 111 951 51
STRAND 113 951 113
COLOUR_TEXT_REGION 113 951 113 951 51
HELIX 7 951 11
COLOUR_TEXT_REGION 7 951 11 951 50
HELIX 14 951 26
COLOUR_TEXT_REGION 14 951 26 951 50
HELIX 47 951 61
COLOUR_TEXT_REGION 47 951 61 951 50
HELIX 66 951 73
COLOUR_TEXT_REGION 66 951 73 951 50
HELIX 80 951 86
COLOUR_TEXT_REGION 80 951 86 951 50
HELIX 114 951 133
COLOUR_TEXT_REGION 114 951 133 951 50