SILENT_MODE BLOCK_FILE jp_JVlzVLe.concise.blc MAX_NSEQ 952 MAX_INPUT_LEN 954 OUTPUT_FILE jp_JVlzVLe.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 138 941 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 942 138 951 H SPACE SUB_CHARS 1 942 138 951 E SPACE SUB_CHARS 1 942 138 951 - SPACE STRAND 32 945 39 COLOUR_TEXT_REGION 32 945 39 945 51 STRAND 94 945 100 COLOUR_TEXT_REGION 94 945 100 945 51 STRAND 105 945 110 COLOUR_TEXT_REGION 105 945 110 945 51 HELIX 7 945 27 COLOUR_TEXT_REGION 7 945 27 945 50 HELIX 47 945 60 COLOUR_TEXT_REGION 47 945 60 945 50 HELIX 66 945 73 COLOUR_TEXT_REGION 66 945 73 945 50 HELIX 80 945 87 COLOUR_TEXT_REGION 80 945 87 945 50 HELIX 113 945 134 COLOUR_TEXT_REGION 113 945 134 945 50 STRAND 32 950 39 COLOUR_TEXT_REGION 32 950 39 950 51 STRAND 95 950 100 COLOUR_TEXT_REGION 95 950 100 950 51 STRAND 105 950 110 COLOUR_TEXT_REGION 105 950 110 950 51 HELIX 7 950 27 COLOUR_TEXT_REGION 7 950 27 950 50 HELIX 48 950 60 COLOUR_TEXT_REGION 48 950 60 950 50 HELIX 66 950 73 COLOUR_TEXT_REGION 66 950 73 950 50 HELIX 80 950 88 COLOUR_TEXT_REGION 80 950 88 950 50 HELIX 113 950 134 COLOUR_TEXT_REGION 113 950 134 950 50 STRAND 31 951 39 COLOUR_TEXT_REGION 31 951 39 951 51 STRAND 94 951 100 COLOUR_TEXT_REGION 94 951 100 951 51 STRAND 105 951 111 COLOUR_TEXT_REGION 105 951 111 951 51 STRAND 113 951 113 COLOUR_TEXT_REGION 113 951 113 951 51 HELIX 7 951 11 COLOUR_TEXT_REGION 7 951 11 951 50 HELIX 14 951 26 COLOUR_TEXT_REGION 14 951 26 951 50 HELIX 47 951 61 COLOUR_TEXT_REGION 47 951 61 951 50 HELIX 66 951 73 COLOUR_TEXT_REGION 66 951 73 951 50 HELIX 80 951 86 COLOUR_TEXT_REGION 80 951 86 951 50 HELIX 114 951 133 COLOUR_TEXT_REGION 114 951 133 951 50