SILENT_MODE
BLOCK_FILE jp_Aqk8m2o.concise.blc
MAX_NSEQ 935
MAX_INPUT_LEN 937
OUTPUT_FILE jp_Aqk8m2o.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 169 924   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 925 169 934 H SPACE
SUB_CHARS 1 925 169 934 E SPACE
SUB_CHARS 1 925 169 934 - SPACE
STRAND 3 928 6
COLOUR_TEXT_REGION 3 928 6 928 51
STRAND 12 928 15
COLOUR_TEXT_REGION 12 928 15 928 51
STRAND 20 928 24
COLOUR_TEXT_REGION 20 928 24 928 51
STRAND 27 928 32
COLOUR_TEXT_REGION 27 928 32 928 51
STRAND 70 928 73
COLOUR_TEXT_REGION 70 928 73 928 51
STRAND 93 928 102
COLOUR_TEXT_REGION 93 928 102 928 51
STRAND 112 928 116
COLOUR_TEXT_REGION 112 928 116 928 51
STRAND 140 928 146
COLOUR_TEXT_REGION 140 928 146 928 51
STRAND 151 928 152
COLOUR_TEXT_REGION 151 928 152 928 51
STRAND 157 928 159
COLOUR_TEXT_REGION 157 928 159 928 51
HELIX 42 928 50
COLOUR_TEXT_REGION 42 928 50 928 50
HELIX 55 928 61
COLOUR_TEXT_REGION 55 928 61 928 50
HELIX 79 928 86
COLOUR_TEXT_REGION 79 928 86 928 50
HELIX 107 928 109
COLOUR_TEXT_REGION 107 928 109 928 50
HELIX 123 928 134
COLOUR_TEXT_REGION 123 928 134 928 50
STRAND 3 933 6
COLOUR_TEXT_REGION 3 933 6 933 51
STRAND 13 933 15
COLOUR_TEXT_REGION 13 933 15 933 51
STRAND 20 933 24
COLOUR_TEXT_REGION 20 933 24 933 51
STRAND 27 933 33
COLOUR_TEXT_REGION 27 933 33 933 51
STRAND 70 933 73
COLOUR_TEXT_REGION 70 933 73 933 51
STRAND 93 933 102
COLOUR_TEXT_REGION 93 933 102 933 51
STRAND 112 933 116
COLOUR_TEXT_REGION 112 933 116 933 51
STRAND 140 933 146
COLOUR_TEXT_REGION 140 933 146 933 51
STRAND 151 933 152
COLOUR_TEXT_REGION 151 933 152 933 51
STRAND 157 933 159
COLOUR_TEXT_REGION 157 933 159 933 51
STRAND 167 933 167
COLOUR_TEXT_REGION 167 933 167 933 51
HELIX 42 933 49
COLOUR_TEXT_REGION 42 933 49 933 50
HELIX 55 933 63
COLOUR_TEXT_REGION 55 933 63 933 50
HELIX 79 933 87
COLOUR_TEXT_REGION 79 933 87 933 50
HELIX 123 933 134
COLOUR_TEXT_REGION 123 933 134 933 50
STRAND 3 934 6
COLOUR_TEXT_REGION 3 934 6 934 51
STRAND 12 934 15
COLOUR_TEXT_REGION 12 934 15 934 51
STRAND 19 934 24
COLOUR_TEXT_REGION 19 934 24 934 51
STRAND 71 934 75
COLOUR_TEXT_REGION 71 934 75 934 51
STRAND 92 934 95
COLOUR_TEXT_REGION 92 934 95 934 51
STRAND 140 934 145
COLOUR_TEXT_REGION 140 934 145 934 51
STRAND 151 934 152
COLOUR_TEXT_REGION 151 934 152 934 51
STRAND 157 934 160
COLOUR_TEXT_REGION 157 934 160 934 51
HELIX 41 934 52
COLOUR_TEXT_REGION 41 934 52 934 50
HELIX 82 934 83
COLOUR_TEXT_REGION 82 934 83 934 50
HELIX 107 934 112
COLOUR_TEXT_REGION 107 934 112 934 50
HELIX 122 934 134
COLOUR_TEXT_REGION 122 934 134 934 50