SILENT_MODE BLOCK_FILE jp_SP5aCsw.concise.blc MAX_NSEQ 558 MAX_INPUT_LEN 560 OUTPUT_FILE jp_SP5aCsw.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 81 547 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 548 81 557 H SPACE SUB_CHARS 1 548 81 557 E SPACE SUB_CHARS 1 548 81 557 - SPACE STRAND 13 551 17 COLOUR_TEXT_REGION 13 551 17 551 51 STRAND 38 551 39 COLOUR_TEXT_REGION 38 551 39 551 51 STRAND 48 551 52 COLOUR_TEXT_REGION 48 551 52 551 51 STRAND 60 551 64 COLOUR_TEXT_REGION 60 551 64 551 51 HELIX 24 551 33 COLOUR_TEXT_REGION 24 551 33 551 50 HELIX 65 551 74 COLOUR_TEXT_REGION 65 551 74 551 50 STRAND 13 556 17 COLOUR_TEXT_REGION 13 556 17 556 51 STRAND 38 556 40 COLOUR_TEXT_REGION 38 556 40 556 51 STRAND 48 556 52 COLOUR_TEXT_REGION 48 556 52 556 51 STRAND 61 556 65 COLOUR_TEXT_REGION 61 556 65 556 51 HELIX 24 556 33 COLOUR_TEXT_REGION 24 556 33 556 50 HELIX 66 556 74 COLOUR_TEXT_REGION 66 556 74 556 50 STRAND 11 557 17 COLOUR_TEXT_REGION 11 557 17 557 51 STRAND 28 557 33 COLOUR_TEXT_REGION 28 557 33 557 51 STRAND 38 557 38 COLOUR_TEXT_REGION 38 557 38 557 51 STRAND 48 557 53 COLOUR_TEXT_REGION 48 557 53 557 51 STRAND 59 557 63 COLOUR_TEXT_REGION 59 557 63 557 51 HELIX 23 557 27 COLOUR_TEXT_REGION 23 557 27 557 50 HELIX 65 557 74 COLOUR_TEXT_REGION 65 557 74 557 50